Variant report

Variant	rs7595599
Chromosome Location	chr2:55122922-55122923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:55122046..55124252-chr2:55124464..55126303,3	MCF-7	breast:
2	chr2:55122602..55124737-chr2:55161405..55163876,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10164641	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13383645	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13385982	0.85[ASN][1000 genomes]
rs13408207	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13410462	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1432104	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17346032	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1898699	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6545454	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6718267	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6729866	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6746577	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7355309	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs9309260	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs997198	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005449	chr2:54938633-55129503	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55087800-55126000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr2:55095200-55148200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr2:55106600-55124000	Weak transcription	Spleen	Spleen
4	chr2:55109200-55126800	Weak transcription	Brain Angular Gyrus	brain
5	chr2:55109200-55127600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:55119000-55124600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:55119000-55124600	Weak transcription	Fetal Brain Female	brain
8	chr2:55119400-55124600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr2:55120400-55130200	Weak transcription	Hela-S3	cervix
10	chr2:55122000-55130200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:55122200-55123000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:55122400-55123000	ZNF genes & repeats	Brain Anterior Caudate	brain
13	chr2:55122400-55123000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:55122400-55123000	ZNF genes & repeats	HSMMtube	muscle
15	chr2:55122400-55123200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
16	chr2:55122400-55123200	ZNF genes & repeats	HepG2	liver
17	chr2:55122400-55123400	ZNF genes & repeats	Brain Hippocampus Middle	brain
18	chr2:55122600-55123200	ZNF genes & repeats	Brain Substantia Nigra	brain
19	chr2:55122600-55123400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr2:55122800-55125200	Weak transcription	Primary B cells from cord blood	blood

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