Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10169987	1.00[EUR][1000 genomes]
rs10174895	1.00[EUR][1000 genomes]
rs10201673	1.00[EUR][1000 genomes]
rs10205078	1.00[EUR][1000 genomes]
rs10929750	1.00[EUR][1000 genomes]
rs12165170	1.00[EUR][1000 genomes]
rs13388093	1.00[EUR][1000 genomes]
rs2043542	1.00[EUR][1000 genomes]
rs4233893	0.83[ASN][1000 genomes]
rs4276001	0.83[ASN][1000 genomes]
rs4668728	1.00[ASN][1000 genomes]
rs4668729	1.00[EUR][1000 genomes]
rs4669732	1.00[ASN][1000 genomes]
rs4669734	1.00[ASN][1000 genomes]
rs4669736	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4669737	1.00[EUR][1000 genomes]
rs4669739	1.00[EUR][1000 genomes]
rs4669740	1.00[EUR][1000 genomes]
rs58651473	1.00[EUR][1000 genomes]
rs6432204	1.00[ASN][1000 genomes]
rs6432205	1.00[ASN][1000 genomes]
rs6432206	1.00[ASN][1000 genomes]
rs6432209	1.00[EUR][1000 genomes]
rs6719003	1.00[EUR][1000 genomes]
rs6719009	1.00[EUR][1000 genomes]
rs6739168	1.00[EUR][1000 genomes]
rs6741736	1.00[EUR][1000 genomes]
rs6756327	1.00[EUR][1000 genomes]
rs7566661	1.00[EUR][1000 genomes]
rs875231	1.00[EUR][1000 genomes]
rs877164	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11623800-11636000	Weak transcription	Pancreas	Pancrea
2	chr2:11624000-11632200	Weak transcription	Right Ventricle	heart
3	chr2:11624000-11638600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:11624400-11631600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:11624600-11630200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:11625800-11634200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:11629000-11638600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:11629200-11630600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:11629400-11630400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr2:11629600-11630600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:11629600-11631000	Weak transcription	Ovary	ovary
12	chr2:11629600-11633200	Genic enhancers	HepG2	liver

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