Variant report

Variant	rs7603777
Chromosome Location	chr2:128270678-128270679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:128268468..128273715-chr2:128281746..128285691,7	MCF-7	breast:
2	chr2:128268636..128271128-chr2:128277665..128280504,3	K562	blood:
3	chr2:128256376..128258910-chr2:128269448..128271942,2	K562	blood:
4	chr2:128268475..128271778-chr2:128281782..128285622,5	K562	blood:

Variant related genes	Relation type
ENSG00000163166	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10190872	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10206221	0.90[ASN][1000 genomes]
rs12470481	0.81[ASN][1000 genomes]
rs12475217	0.91[ASN][1000 genomes]
rs12621149	0.97[ASN][1000 genomes]
rs12987418	0.81[ASN][1000 genomes]
rs13397441	0.88[ASN][1000 genomes]
rs13399231	0.87[ASN][1000 genomes]
rs13415053	0.88[ASN][1000 genomes]
rs1549767	0.97[ASN][1000 genomes]
rs17015347	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17015399	0.87[ASN][1000 genomes]
rs173013	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17522960	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2078028	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2176595	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2249646	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2566564	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2679402	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2679407	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs334139	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334140	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs334142	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs334147	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs334148	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs334149	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs334150	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs334153	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs334155	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs334162	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3732208	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4423553	0.88[ASN][1000 genomes]
rs55981410	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56217122	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56234754	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58462277	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59934067	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61342606	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6707186	0.84[ASN][1000 genomes]
rs6707425	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6722447	0.95[ASN][1000 genomes]
rs6731270	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6734816	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6748790	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6757654	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72958594	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72958600	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7570609	0.88[ASN][1000 genomes]
rs7572181	0.88[ASN][1000 genomes]
rs7574209	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7574215	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7576217	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7598346	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs777547	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs777549	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs777550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs777551	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs777557	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs777558	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs777561	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs777562	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs777563	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875014	chr2:128178415-128328375	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128246200-128271800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:128262600-128283000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:128263000-128272000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:128263000-128281200	Weak transcription	Fetal Kidney	kidney
5	chr2:128263200-128271400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:128263200-128271400	Weak transcription	Colonic Mucosa	Colon
7	chr2:128263200-128271600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:128263200-128271600	Weak transcription	Pancreas	Pancrea
9	chr2:128263200-128271600	Weak transcription	Spleen	Spleen
10	chr2:128263200-128271800	Weak transcription	Aorta	Aorta
11	chr2:128263200-128271800	Weak transcription	Brain Germinal Matrix	brain
12	chr2:128263200-128271800	Weak transcription	Esophagus	oesophagus
13	chr2:128263200-128282800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:128263400-128271600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr2:128263400-128271600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr2:128263400-128271800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr2:128263400-128271800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:128263400-128275400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr2:128265600-128272000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr2:128266000-128282800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr2:128266200-128271600	Weak transcription	Right Atrium	heart
22	chr2:128266600-128271000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr2:128266600-128271400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr2:128266600-128271400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr2:128266600-128271600	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr2:128266600-128271600	Weak transcription	Fetal Brain Female	brain
27	chr2:128266600-128271600	Weak transcription	Lung	lung
28	chr2:128266600-128271600	Weak transcription	Ovary	ovary
29	chr2:128266600-128271800	Weak transcription	Fetal Lung	lung
30	chr2:128266600-128272000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr2:128266800-128271200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr2:128266800-128271400	Weak transcription	Fetal Stomach	stomach
33	chr2:128266800-128271400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr2:128266800-128271400	Weak transcription	HSMMtube	muscle
35	chr2:128266800-128271600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr2:128266800-128271800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr2:128266800-128272400	Weak transcription	HMEC	breast
38	chr2:128267000-128271600	Weak transcription	Brain Angular Gyrus	brain
39	chr2:128267000-128271600	Weak transcription	Brain Anterior Caudate	brain
40	chr2:128267200-128271400	Weak transcription	Fetal Muscle Trunk	muscle
41	chr2:128267200-128271400	Weak transcription	Fetal Muscle Leg	muscle
42	chr2:128267200-128271600	Weak transcription	Gastric	stomach
43	chr2:128267200-128274400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
44	chr2:128267200-128282000	Weak transcription	Fetal Brain Male	brain
45	chr2:128267400-128271600	Enhancers	Brain Substantia Nigra	brain
46	chr2:128267400-128273200	Strong transcription	Primary B cells from cord blood	blood
47	chr2:128267600-128272600	Strong transcription	Primary B cells from peripheral blood	blood
48	chr2:128267600-128281200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr2:128267600-128282000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr2:128267800-128271800	Weak transcription	NHLF	lung

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