Variant report

Variant	rs7607918
Chromosome Location	chr2:210683327-210683328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12386217	1.00[AMR][1000 genomes]
rs13412050	1.00[AMR][1000 genomes]
rs55928661	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55967055	1.00[AMR][1000 genomes]
rs58870389	1.00[AMR][1000 genomes]
rs61626501	1.00[AMR][1000 genomes]
rs6752838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7605577	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3142	chr2:210660150-210705006	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210652200-210685000	Weak transcription	Brain Angular Gyrus	brain
2	chr2:210674400-210685000	Weak transcription	Fetal Brain Female	brain
3	chr2:210674800-210685000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:210678600-210688400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:210680000-210706800	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:210681000-210684200	Strong transcription	Brain Anterior Caudate	brain
7	chr2:210681400-210684000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:210681400-210684400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:210681800-210684000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr2:210681800-210684000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr2:210681800-210684000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr2:210681800-210686400	Strong transcription	Pancreatic Islets	Pancreatic Islet
13	chr2:210682000-210683600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr2:210682000-210686400	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr2:210682000-210769600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr2:210682200-210683600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr2:210682200-210684000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr2:210682600-210683800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr2:210682800-210683800	Strong transcription	Brain Germinal Matrix	brain
20	chr2:210682800-210685000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr2:210683000-210685000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr2:210683000-210696000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr2:210683200-210684000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr2:210683200-210684000	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr2:210683200-210685000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr2:210683200-210685000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr2:210683200-210686600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links