Variant report

Variant	rs7608699
Chromosome Location	chr2:210634044-210634045
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10175169	1.00[ASW][hapmap]
rs1558439	1.00[MEX][hapmap]
rs16843910	1.00[ASW][hapmap]
rs16843914	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs16843979	1.00[MEX][hapmap]
rs16843983	1.00[MEX][hapmap]
rs2191916	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2215626	1.00[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs2887862	0.86[YRI][hapmap]
rs41502644	1.00[MEX][hapmap]
rs6435539	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6741657	1.00[MEX][hapmap]
rs6754623	1.00[ASW][hapmap]
rs7572221	1.00[MEX][hapmap]
rs7593770	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210632600-210636200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links