Variant report

Variant	rs760883
Chromosome Location	chr6:16625620-16625621
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17603856	0.86[ASW][hapmap]
rs2143067	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031423	chr6:16467215-16823725	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16584000-16670000	Weak transcription	Fetal Brain Male	brain
2	chr6:16585400-16644800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:16586800-16629000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:16588600-16626000	Weak transcription	NH-A	brain
5	chr6:16592600-16645000	Weak transcription	Adipose Nuclei	Adipose
6	chr6:16592800-16635200	Weak transcription	Aorta	Aorta
7	chr6:16597400-16628800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:16597600-16633800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:16599400-16629600	Weak transcription	Left Ventricle	heart
10	chr6:16602400-16636400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:16604400-16626200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:16604400-16626600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr6:16605000-16626000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:16605200-16630200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:16605200-16632400	Weak transcription	Fetal Intestine Small	intestine
16	chr6:16605200-16635000	Weak transcription	Liver	Liver
17	chr6:16606000-16653200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:16609800-16630400	Weak transcription	Fetal Stomach	stomach
19	chr6:16609800-16639200	Weak transcription	Fetal Intestine Large	intestine
20	chr6:16610000-16629200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:16619000-16636400	Weak transcription	Ovary	ovary
22	chr6:16619800-16626800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:16620000-16629000	Weak transcription	Fetal Lung	lung
24	chr6:16621200-16634000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:16621600-16625800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr6:16621600-16633600	Weak transcription	Pancreas	Pancrea
27	chr6:16622200-16651400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:16622600-16626000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr6:16622800-16626400	Enhancers	Osteobl	bone
30	chr6:16622800-16632800	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr6:16623200-16626200	Enhancers	NHDF-Ad	bronchial
32	chr6:16623200-16633600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr6:16623200-16633600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr6:16623200-16634200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr6:16623400-16626200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:16623400-16626200	Weak transcription	GM12878-XiMat	blood
37	chr6:16623600-16625800	Weak transcription	NHLF	lung
38	chr6:16623600-16627200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:16623600-16630000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr6:16623800-16625800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:16623800-16633600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:16623800-16634000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr6:16623800-16634400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:16623800-16636000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:16623800-16636200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:16624000-16633600	Weak transcription	HepG2	liver
47	chr6:16624000-16636200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr6:16624000-16636400	Weak transcription	Hela-S3	cervix
49	chr6:16624600-16625800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:16624800-16626200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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