Variant report
| Variant | rs7609585 |
|---|---|
| Chromosome Location | chr3:145324552-145324553 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:57783949..57786666-chr3:145323683..145325682,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000062716 | Chromatin interaction |
| ENSG00000141378 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11921837 | 0.81[EUR][1000 genomes] |
| rs12107276 | 0.81[EUR][1000 genomes] |
| rs12489149 | 0.80[EUR][1000 genomes] |
| rs12495502 | 0.80[EUR][1000 genomes] |
| rs12629826 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs13076053 | 0.81[EUR][1000 genomes] |
| rs1481074 | 0.92[CEU][hapmap];0.80[CHB][hapmap] |
| rs1585942 | 0.89[CEU][hapmap];0.81[CHB][hapmap] |
| rs17236068 | 0.81[EUR][1000 genomes] |
| rs2178058 | 0.80[EUR][1000 genomes] |
| rs2178059 | 0.80[EUR][1000 genomes] |
| rs2375833 | 0.85[CEU][hapmap] |
| rs2375834 | 0.89[CEU][hapmap];0.81[CHB][hapmap] |
| rs2889217 | 0.92[CEU][hapmap];0.80[CHB][hapmap] |
| rs35234760 | 0.81[EUR][1000 genomes] |
| rs56148210 | 0.81[EUR][1000 genomes] |
| rs61099470 | 0.81[EUR][1000 genomes] |
| rs62271849 | 0.81[EUR][1000 genomes] |
| rs66972809 | 0.80[EUR][1000 genomes] |
| rs67320965 | 0.80[EUR][1000 genomes] |
| rs7631978 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877584 | chr3:144903957-145833232 | Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv877587 | chr3:144949453-145355433 | Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1013005 | chr3:145285648-145357856 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 4 | nsv877607 | chr3:145291677-145370402 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 5 | esv3381938 | chr3:145302303-145330882 | ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 6 | nsv877608 | chr3:145303492-145362754 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 7 | nsv460880 | chr3:145321967-145391100 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 8 | nsv591935 | chr3:145321967-145391100 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
