Variant report

Variant	rs7610768
Chromosome Location	chr3:143165929-143165930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10513199	1.00[AMR][1000 genomes]
rs11925776	1.00[AMR][1000 genomes]
rs16853508	1.00[AMR][1000 genomes]
rs16853511	1.00[AMR][1000 genomes]
rs16853527	1.00[AMR][1000 genomes]
rs16853529	1.00[AMR][1000 genomes]
rs34043464	1.00[AMR][1000 genomes]
rs57334336	1.00[AMR][1000 genomes]
rs57687610	1.00[AMR][1000 genomes]
rs58810476	1.00[AMR][1000 genomes]
rs6440173	0.90[YRI][hapmap];0.87[AFR][1000 genomes]
rs6440175	0.90[AFR][1000 genomes]
rs72992119	1.00[AMR][1000 genomes]
rs72992127	1.00[AMR][1000 genomes]
rs72992177	1.00[AMR][1000 genomes]
rs72992193	1.00[AMR][1000 genomes]
rs72992195	1.00[AMR][1000 genomes]
rs72992201	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143155800-143169800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:143159600-143200800	Weak transcription	Esophagus	oesophagus
3	chr3:143162600-143169800	Weak transcription	Brain Substantia Nigra	brain
4	chr3:143162800-143167600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:143163400-143167200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:143163400-143181400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr3:143163400-143196800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:143163600-143169800	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:143163600-143184000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr3:143163600-143187000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:143163800-143170600	Weak transcription	Fetal Lung	lung
12	chr3:143163800-143183600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:143163800-143196400	Weak transcription	Fetal Stomach	stomach
14	chr3:143163800-143203400	Weak transcription	Ovary	ovary
15	chr3:143164000-143175000	Weak transcription	Primary T cells from cord blood	blood
16	chr3:143164600-143169400	Weak transcription	GM12878-XiMat	blood
17	chr3:143164600-143169600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:143164600-143169600	Weak transcription	Primary B cells from cord blood	blood
19	chr3:143164800-143169600	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr3:143164800-143169600	Weak transcription	Monocytes-CD14+_RO01746	blood

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