Variant report

Variant	rs7610971
Chromosome Location	chr3:23367021-23367022
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23361011..23363823-chr3:23364424..23367156,3	MCF-7	breast:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10451986	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11129112	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11129114	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11916447	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11921580	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928344	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12185989	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12630883	0.94[ASN][1000 genomes]
rs12632777	0.86[ASN][1000 genomes]
rs12633613	0.94[ASN][1000 genomes]
rs12634459	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12636682	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1495135	0.90[ASN][1000 genomes]
rs17341838	0.92[ASN][1000 genomes]
rs17343818	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17403650	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1826847	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1908772	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2172827	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2359637	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2359638	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28370926	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2884787	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4368441	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4553929	0.83[AMR][1000 genomes]
rs55895449	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55934161	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57055494	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57172051	0.80[ASN][1000 genomes]
rs57234542	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57258152	0.80[ASN][1000 genomes]
rs57575542	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs57624654	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57801020	0.81[ASN][1000 genomes]
rs57869672	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60407944	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6550761	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6762615	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6763074	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6764047	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6765562	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6766166	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6771053	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6771206	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6773311	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6776770	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6778478	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6792462	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6797467	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6807390	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6807788	0.82[ASN][1000 genomes]
rs73033545	0.92[ASN][1000 genomes]
rs73033551	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73043636	0.81[ASN][1000 genomes]
rs7428484	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7611132	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7613733	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7613969	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7614926	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7617659	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7622913	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7632520	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7635784	0.94[ASN][1000 genomes]
rs7636536	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7638278	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7638405	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7641764	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7646505	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7649682	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7651175	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs903518	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9814419	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9820931	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9825835	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9835256	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9839409	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9841308	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9841518	0.93[ASN][1000 genomes]
rs9842014	0.81[ASN][1000 genomes]
rs9844723	0.94[ASN][1000 genomes]
rs9845536	0.92[ASN][1000 genomes]
rs9881808	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9882514	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004417	chr3:23318797-23389422	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23356800-23367600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:23357000-23378800	Weak transcription	Brain Angular Gyrus	brain
3	chr3:23363200-23371000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:23363800-23371000	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:23365200-23367400	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr3:23365200-23367400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr3:23365400-23368000	Enhancers	Primary B cells from cord blood	blood
8	chr3:23365600-23367200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:23365800-23367400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr3:23365800-23367400	Enhancers	Dnd41	blood
11	chr3:23365800-23367400	Enhancers	NH-A	brain
12	chr3:23365800-23367400	Enhancers	Osteobl	bone
13	chr3:23366000-23367200	Enhancers	HSMM	muscle
14	chr3:23366000-23367400	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr3:23366000-23367400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:23366000-23367400	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr3:23366000-23368000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:23366200-23371000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:23366400-23367200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr3:23366400-23367200	Enhancers	Stomach Mucosa	stomach
21	chr3:23366400-23367400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:23366400-23367400	Flanking Active TSS	HMEC	breast
23	chr3:23366400-23368000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr3:23366600-23367200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:23366600-23367200	Enhancers	Brain Substantia Nigra	brain
26	chr3:23366600-23367400	Enhancers	Brain Cingulate Gyrus	brain
27	chr3:23366600-23367400	Flanking Active TSS	GM12878-XiMat	blood
28	chr3:23366600-23372600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr3:23366800-23367200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:23366800-23367200	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr3:23366800-23367200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:23366800-23367200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr3:23366800-23367200	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr3:23366800-23367200	Enhancers	NHEK	skin
35	chr3:23366800-23367400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:23366800-23367400	Enhancers	Primary T cells from cord blood	blood
37	chr3:23366800-23367400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr3:23366800-23367400	Enhancers	NHDF-Ad	bronchial
39	chr3:23366800-23368000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:23366800-23368000	Enhancers	Primary B cells from peripheral blood	blood
41	chr3:23366800-23368000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:23366800-23368600	Weak transcription	NHLF	lung
43	chr3:23367000-23367200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr3:23367000-23367400	Enhancers	Brain Anterior Caudate	brain
45	chr3:23367000-23367600	Enhancers	HUVEC	blood vessel
46	chr3:23367000-23369000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr3:23367000-23378800	Weak transcription	HSMMtube	muscle

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