Variant report
| Variant | rs7611410 |
|---|---|
| Chromosome Location | chr3:144656958-144656959 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10804698 | 0.84[AMR][1000 genomes] |
| rs11714435 | 0.84[AMR][1000 genomes] |
| rs4254701 | 0.84[AMR][1000 genomes] |
| rs4362764 | 0.84[AMR][1000 genomes] |
| rs4381987 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4405957 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4426713 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4541446 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4681642 | 0.84[AMR][1000 genomes] |
| rs61294843 | 0.84[AMR][1000 genomes] |
| rs6440286 | 0.84[AMR][1000 genomes] |
| rs6440289 | 0.84[AMR][1000 genomes] |
| rs6440290 | 0.84[AMR][1000 genomes] |
| rs6440311 | 0.84[AMR][1000 genomes] |
| rs6765625 | 0.84[AMR][1000 genomes] |
| rs6767341 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6778480 | 0.84[AMR][1000 genomes] |
| rs6782683 | 0.84[AMR][1000 genomes] |
| rs6794760 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6800640 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7427359 | 0.84[AMR][1000 genomes] |
| rs7427634 | 0.84[AMR][1000 genomes] |
| rs7427709 | 0.84[AMR][1000 genomes] |
| rs7619338 | 0.84[AMR][1000 genomes] |
| rs7623306 | 0.84[AMR][1000 genomes] |
| rs7624601 | 0.84[AMR][1000 genomes] |
| rs7646371 | 0.84[AMR][1000 genomes] |
| rs9289690 | 0.84[AMR][1000 genomes] |
| rs9828040 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9843234 | 0.84[AMR][1000 genomes] |
| rs9855250 | 0.91[EUR][1000 genomes] |
| rs9855376 | 0.91[EUR][1000 genomes] |
| rs9863285 | 0.84[AMR][1000 genomes] |
| rs9865339 | 0.84[AMR][1000 genomes] |
| rs9877095 | 0.84[AMR][1000 genomes] |
| rs9917709 | 0.84[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv591928 | chr3:144050897-144822081 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv3357831 | chr3:144433846-144790831 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv3405013 | chr3:144433866-144790801 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1005754 | chr3:144529346-144984363 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv525344 | chr3:144584373-144663231 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:144656800-144657800 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
