Variant report

Variant	rs761174
Chromosome Location	chr1:210651567-210651568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12130471	0.88[YRI][hapmap]
rs2223631	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4376	chr1:210627620-210672326	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210631000-210653800	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:210639400-210668200	Weak transcription	Primary T cells from cord blood	blood
3	chr1:210640000-210660400	Weak transcription	Aorta	Aorta
4	chr1:210643200-210674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:210645000-210653600	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:210645400-210652200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:210646000-210653400	Weak transcription	HSMM	muscle
8	chr1:210648000-210656400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:210648400-210658800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:210648800-210660400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:210650200-210652600	Enhancers	Fetal Heart	heart
12	chr1:210650800-210655000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:210651000-210652000	Weak transcription	Left Ventricle	heart
14	chr1:210651200-210651600	Weak transcription	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links