Variant report

Variant	rs7614192
Chromosome Location	chr3:143081283-143081284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:143079326..143082089-chr3:143083976..143087226,3	K562	blood:
2	chr3:143075166..143076875-chr3:143081187..143082787,2	K562	blood:
3	chr3:143076644..143082089-chr3:143083976..143087336,5	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2352730	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4839628	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6414355	0.94[ASN][1000 genomes]
rs6765636	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv877564	chr3:143059952-143116883	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877565	chr3:143078986-143116883	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143068200-143091800	Weak transcription	Lung	lung
2	chr3:143068800-143082000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:143069000-143081600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr3:143070200-143088600	Weak transcription	Aorta	Aorta
5	chr3:143071200-143081600	Weak transcription	Fetal Lung	lung
6	chr3:143071600-143102400	Weak transcription	Esophagus	oesophagus
7	chr3:143072000-143099400	Weak transcription	Ovary	ovary
8	chr3:143072400-143082200	Weak transcription	Primary B cells from cord blood	blood
9	chr3:143072400-143083000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr3:143072400-143083000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr3:143073400-143089600	Weak transcription	Psoas Muscle	Psoas
12	chr3:143077400-143104800	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:143078200-143081400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr3:143079000-143081400	Weak transcription	Stomach Mucosa	stomach
15	chr3:143079400-143081600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr3:143080000-143081600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:143080600-143081800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:143080600-143083000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr3:143080800-143081600	Enhancers	K562	blood
20	chr3:143080800-143081800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:143080800-143082000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:143080800-143082200	Enhancers	NH-A	brain
23	chr3:143080800-143082800	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr3:143080800-143083000	Enhancers	Primary T cells from cord blood	blood
25	chr3:143080800-143083000	Flanking Active TSS	Dnd41	blood
26	chr3:143080800-143083200	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr3:143080800-143083600	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr3:143081000-143083200	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr3:143081200-143081400	Enhancers	Adipose Nuclei	Adipose
30	chr3:143081200-143082200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr3:143081200-143082200	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr3:143081200-143082400	Enhancers	Fetal Thymus	thymus
33	chr3:143081200-143082800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr3:143081200-143082800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr3:143081200-143083000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr3:143081200-143083400	Enhancers	Primary hematopoietic stem cells	blood

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