Variant report

Variant	rs7617259
Chromosome Location	chr3:119506395-119506396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119420317..119422309-chr3:119504669..119506842,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183833	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13316467	0.90[AFR][1000 genomes]
rs13316524	0.90[AFR][1000 genomes]
rs13318819	0.95[AFR][1000 genomes]
rs28370398	0.90[AFR][1000 genomes]
rs28415065	0.90[AFR][1000 genomes]
rs28464044	0.90[AFR][1000 genomes]
rs28484588	0.90[AFR][1000 genomes]
rs28595123	0.90[AFR][1000 genomes]
rs28678836	0.90[AFR][1000 genomes]
rs6795467	0.90[AFR][1000 genomes]
rs7618191	1.00[AFR][1000 genomes]
rs9289133	0.90[AFR][1000 genomes]
rs9810454	0.90[AFR][1000 genomes]
rs9811271	0.90[AFR][1000 genomes]
rs9813490	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9814138	0.90[AFR][1000 genomes]
rs9815987	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9817771	0.90[AFR][1000 genomes]
rs9819218	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9820811	0.90[AFR][1000 genomes]
rs9824097	0.90[AFR][1000 genomes]
rs9834015	1.00[AFR][1000 genomes]
rs9835381	0.90[AFR][1000 genomes]
rs9837808	0.90[AFR][1000 genomes]
rs9842101	0.90[AFR][1000 genomes]
rs9844223	1.00[AFR][1000 genomes]
rs9844543	1.00[AFR][1000 genomes]
rs9847782	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9851058	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9853426	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9856637	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9858328	0.90[AFR][1000 genomes]
rs9859568	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9860171	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9864160	0.85[AFR][1000 genomes]
rs9865259	0.90[AFR][1000 genomes]
rs9866905	0.90[AFR][1000 genomes]
rs9870607	0.90[AFR][1000 genomes]
rs9875512	0.90[AFR][1000 genomes]
rs9881432	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119500200-119514400	Weak transcription	Small Intestine	intestine
2	chr3:119501800-119515000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:119503000-119507200	Weak transcription	Stomach Mucosa	stomach
4	chr3:119503200-119513400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:119505000-119506400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:119505200-119510600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:119505200-119511000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr3:119505800-119507400	Weak transcription	Fetal Intestine Small	intestine
9	chr3:119505800-119512000	Weak transcription	HepG2	liver
10	chr3:119506000-119506400	Flanking Active TSS	Liver	Liver
11	chr3:119506200-119507400	Genic enhancers	Fetal Intestine Large	intestine

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