Variant report

Variant	rs7619242
Chromosome Location	chr3:81957984-81957985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10433513	0.82[AFR][1000 genomes]
rs11127744	0.87[AFR][1000 genomes]
rs17019418	0.87[AFR][1000 genomes]
rs55988714	0.82[AFR][1000 genomes]
rs61617076	0.82[AFR][1000 genomes]
rs6784904	0.82[AFR][1000 genomes]
rs73138733	0.87[AFR][1000 genomes]
rs73138765	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81953600-81959000	Weak transcription	Psoas Muscle	Psoas
2	chr3:81957600-81958000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:81957600-81958000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:81957600-81958200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:81957600-81958200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr3:81957600-81958200	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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