Variant report

Variant	rs7627051
Chromosome Location	chr3:85070579-85070580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17420038	0.88[EUR][1000 genomes]
rs17420520	0.89[EUR][1000 genomes]
rs17734184	0.88[EUR][1000 genomes]
rs17734437	0.88[EUR][1000 genomes]
rs17791224	0.88[EUR][1000 genomes]
rs1872555	0.88[EUR][1000 genomes]
rs2036062	0.88[EUR][1000 genomes]
rs57529094	0.91[ASN][1000 genomes]
rs6796144	0.88[EUR][1000 genomes]
rs73137632	0.80[EUR][1000 genomes]
rs73137640	0.82[EUR][1000 genomes]
rs73137663	0.88[EUR][1000 genomes]
rs73139661	0.88[EUR][1000 genomes]
rs73139668	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73139674	0.88[EUR][1000 genomes]
rs73139689	0.90[EUR][1000 genomes]
rs73139694	0.90[EUR][1000 genomes]
rs73843268	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1001316	chr3:84773522-85071342	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1829788	chr3:84926769-85086403	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85055800-85081400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:85057200-85071400	Weak transcription	Brain Anterior Caudate	brain
3	chr3:85065200-85082200	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:85066200-85071200	Weak transcription	Brain Substantia Nigra	brain
5	chr3:85068600-85090600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:85068800-85071400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:85069800-85070600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:85070000-85071200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:85070000-85073000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:85070400-85070600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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