Variant report

Variant	rs7627274
Chromosome Location	chr3:142674960-142674961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs3732742	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6781427	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6782203	1.00[ASN][1000 genomes]
rs6782209	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72990707	1.00[AMR][1000 genomes]
rs72990714	1.00[AMR][1000 genomes]
rs72990829	1.00[AMR][1000 genomes]
rs72993783	1.00[AMR][1000 genomes]
rs72994549	1.00[AMR][1000 genomes]
rs72999509	1.00[AMR][1000 genomes]
rs72999535	1.00[AMR][1000 genomes]
rs73003356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73003379	1.00[AMR][1000 genomes]
rs73005387	1.00[AMR][1000 genomes]
rs73866279	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73866283	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs73866284	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv4040	chr3:142649146-142675752	Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv877563	chr3:142661350-142743889	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142667200-142681000	Weak transcription	Right Ventricle	heart
2	chr3:142669200-142680800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:142672600-142676800	Weak transcription	Left Ventricle	heart
4	chr3:142672800-142675200	Weak transcription	HepG2	liver
5	chr3:142672800-142677200	Weak transcription	Liver	Liver
6	chr3:142673000-142676800	Weak transcription	K562	blood
7	chr3:142674200-142680200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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