Variant report

Variant	rs7628489
Chromosome Location	chr3:46267875-46267876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46266350..46268265-chr3:46273199..46276182,2	K562	blood:

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10510750	1.00[CEU][hapmap]
rs11914967	0.95[YRI][hapmap];0.90[AFR][1000 genomes]
rs11919943	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11929489	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13060713	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13060802	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062523	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13067058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13073976	1.00[CEU][hapmap]
rs13075270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075836	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs13088766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13092160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13095940	1.00[ASN][1000 genomes]
rs13095946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13096307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13096325	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs13096371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13096808	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs13097340	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs13100243	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1542755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542756	0.94[EUR][1000 genomes]
rs17217831	1.00[CEU][hapmap]
rs17283712	1.00[CEU][hapmap]
rs2131092	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2373156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2856762	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs3091310	1.00[CEU][hapmap]
rs3091314	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs3136667	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs3136672	0.82[AMR][1000 genomes]
rs3176824	1.00[ASN][1000 genomes]
rs3176825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3176826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3181076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3181078	1.00[ASN][1000 genomes]
rs3181080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs33998492	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34005848	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34047458	1.00[ASN][1000 genomes]
rs34194160	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34272024	0.80[EUR][1000 genomes]
rs34280313	1.00[ASN][1000 genomes]
rs34289272	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34376347	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34414382	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34423195	1.00[ASN][1000 genomes]
rs34498313	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34531115	1.00[ASN][1000 genomes]
rs34611049	0.82[AMR][1000 genomes]
rs34625088	1.00[ASN][1000 genomes]
rs34677490	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34692251	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34745455	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34759782	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34865316	1.00[ASN][1000 genomes]
rs34919616	1.00[ASN][1000 genomes]
rs34985947	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35195804	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35335084	1.00[ASN][1000 genomes]
rs35354367	1.00[ASN][1000 genomes]
rs35429781	1.00[ASN][1000 genomes]
rs35431271	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35481399	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35587265	1.00[ASN][1000 genomes]
rs35613615	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35614049	1.00[ASN][1000 genomes]
rs35617677	1.00[ASN][1000 genomes]
rs35678191	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35775079	0.92[ASN][1000 genomes]
rs35984988	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36000011	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41432345	1.00[ASN][1000 genomes]
rs41537946	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4987053	1.00[CEU][hapmap]
rs56698532	0.81[AFR][1000 genomes]
rs57115330	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57560436	0.90[AFR][1000 genomes]
rs59340338	0.87[AFR][1000 genomes]
rs6775046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327039	1.00[ASN][1000 genomes]
rs71327040	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327041	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327042	0.94[EUR][1000 genomes]
rs71327043	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327044	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71615441	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73833005	0.83[AFR][1000 genomes]
rs73833018	0.83[AFR][1000 genomes]
rs73833020	0.82[AFR][1000 genomes]
rs7618935	0.89[AFR][1000 genomes]
rs7620586	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7624155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7631551	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs7631658	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs7651539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653045	0.95[YRI][hapmap];0.90[AFR][1000 genomes]
rs916092	1.00[JPT][hapmap]
rs9832730	1.00[CEU][hapmap]
rs9838191	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46263600-46270000	Weak transcription	Fetal Lung	lung
2	chr3:46264200-46269600	Weak transcription	Placenta	Placenta
3	chr3:46264400-46276400	Weak transcription	Fetal Thymus	thymus
4	chr3:46265600-46270000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:46265600-46276400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:46265800-46269400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:46267400-46269200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:46267600-46269000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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