Variant report

Variant	rs7629327
Chromosome Location	chr3:23343762-23343763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs1027380	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11707450	0.84[CEU][hapmap];0.92[YRI][hapmap]
rs11711630	0.86[ASN][1000 genomes]
rs11715035	0.83[CEU][hapmap];0.91[YRI][hapmap]
rs11715107	0.87[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs13087416	0.86[ASN][1000 genomes]
rs13095887	0.85[ASN][1000 genomes]
rs13323077	0.94[CEU][hapmap];0.83[JPT][hapmap]
rs1390083	0.93[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs1495133	0.93[CHB][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap];0.95[ASN][1000 genomes]
rs1495134	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs1552931	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs1692619	0.83[CEU][hapmap];0.91[YRI][hapmap]
rs1692621	0.84[YRI][hapmap]
rs1692647	0.95[CEU][hapmap];0.84[JPT][hapmap]
rs1695180	0.84[CEU][hapmap];0.92[YRI][hapmap]
rs1695192	0.95[CEU][hapmap];0.83[JPT][hapmap]
rs1695203	0.95[CEU][hapmap];0.82[JPT][hapmap]
rs17013268	0.83[YRI][hapmap]
rs17342342	0.87[ASN][1000 genomes]
rs17402378	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs1874234	0.84[CEU][hapmap];0.92[YRI][hapmap];0.80[EUR][1000 genomes]
rs1874502	0.84[CEU][hapmap];0.90[YRI][hapmap];0.80[EUR][1000 genomes]
rs1874503	0.84[CEU][hapmap];0.92[YRI][hapmap];0.80[EUR][1000 genomes]
rs1994953	0.86[EUR][1000 genomes]
rs1995175	0.95[CEU][hapmap]
rs2036044	0.84[CEU][hapmap];0.92[YRI][hapmap]
rs2036045	0.92[YRI][hapmap]
rs2047340	0.93[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs2055155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2055156	0.91[YRI][hapmap]
rs2055307	0.91[YRI][hapmap]
rs2088129	0.95[ASN][1000 genomes]
rs2101811	0.84[CEU][hapmap];0.92[YRI][hapmap]
rs2132144	0.87[EUR][1000 genomes]
rs2132145	0.87[CHB][hapmap];0.83[JPT][hapmap];0.91[YRI][hapmap];0.81[ASN][1000 genomes]
rs2132147	0.93[CHB][hapmap];0.83[JPT][hapmap];0.95[ASN][1000 genomes]
rs2132148	0.93[YRI][hapmap]
rs2132149	0.87[YRI][hapmap];0.85[ASN][1000 genomes]
rs2173057	0.83[CEU][hapmap]
rs2201484	0.92[YRI][hapmap]
rs2359754	0.83[EUR][1000 genomes]
rs2359755	0.88[YRI][hapmap]
rs2359760	0.85[ASN][1000 genomes]
rs2359761	0.83[CEU][hapmap];0.92[YRI][hapmap]
rs36073188	0.85[ASN][1000 genomes]
rs4293660	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4334589	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4858063	0.91[YRI][hapmap]
rs4858065	0.87[ASN][1000 genomes]
rs4858066	0.86[ASN][1000 genomes]
rs4858068	0.80[EUR][1000 genomes]
rs4858070	0.82[CEU][hapmap];0.91[YRI][hapmap];0.80[EUR][1000 genomes]
rs4858488	0.93[ASN][1000 genomes]
rs4858489	0.83[EUR][1000 genomes]
rs4858490	0.89[YRI][hapmap];0.82[EUR][1000 genomes]
rs4858495	0.83[CEU][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes]
rs4858498	0.99[ASN][1000 genomes]
rs4858499	0.90[YRI][hapmap];0.86[EUR][1000 genomes]
rs4858507	0.83[CEU][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes]
rs5023615	0.83[CEU][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes]
rs6550754	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6550758	0.90[EUR][1000 genomes]
rs6550760	0.91[YRI][hapmap]
rs6769959	0.94[ASN][1000 genomes]
rs6780388	0.84[CEU][hapmap]
rs6790185	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6790327	0.84[CEU][hapmap];0.92[YRI][hapmap];0.84[EUR][1000 genomes]
rs6801824	0.84[CEU][hapmap];0.92[YRI][hapmap]
rs6806387	1.00[CHB][hapmap];0.83[JPT][hapmap];0.97[ASN][1000 genomes]
rs73149661	0.87[ASN][1000 genomes]
rs7618910	0.94[ASN][1000 genomes]
rs7621680	0.86[EUR][1000 genomes]
rs7635882	0.95[ASN][1000 genomes]
rs7636532	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7643705	0.84[CEU][hapmap];0.92[YRI][hapmap]
rs7646541	0.95[CEU][hapmap]
rs7648425	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7653868	0.85[EUR][1000 genomes]
rs778463	0.83[CEU][hapmap];0.91[YRI][hapmap]
rs778492	0.84[CEU][hapmap]
rs778493	0.93[CHB][hapmap]
rs778497	0.83[CEU][hapmap];0.91[YRI][hapmap]
rs778502	0.84[CEU][hapmap]
rs778515	0.94[CEU][hapmap]
rs778520	0.95[CEU][hapmap]
rs778524	0.95[CEU][hapmap];0.84[JPT][hapmap]
rs801277	0.95[CEU][hapmap]
rs903519	0.86[ASN][1000 genomes]
rs931609	0.83[CEU][hapmap];0.91[YRI][hapmap]
rs9631541	0.94[CEU][hapmap]
rs9757330	0.84[CEU][hapmap];0.92[YRI][hapmap]
rs9758590	0.84[CEU][hapmap];0.92[YRI][hapmap]
rs9815299	0.83[CEU][hapmap];0.91[YRI][hapmap];0.86[EUR][1000 genomes]
rs9823684	0.83[EUR][1000 genomes]
rs9826103	0.95[ASN][1000 genomes]
rs9836135	0.93[YRI][hapmap]
rs9840015	1.00[ASN][1000 genomes]
rs9840808	0.86[EUR][1000 genomes]
rs9841336	0.84[EUR][1000 genomes]
rs9844558	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9848331	1.00[CHB][hapmap];0.84[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9848389	0.84[CEU][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes]
rs9849679	0.88[EUR][1000 genomes]
rs9862734	0.94[CEU][hapmap];0.83[JPT][hapmap]
rs9863465	0.84[EUR][1000 genomes]
rs9875910	0.83[CEU][hapmap];0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004417	chr3:23318797-23389422	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv967177	chr3:23337450-23350050	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23337600-23358400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr3:23343000-23347200	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:23343200-23350200	Weak transcription	Psoas Muscle	Psoas
4	chr3:23343400-23344200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:23343400-23344400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:23343400-23344400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:23343400-23344600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:23343400-23346600	Weak transcription	Ovary	ovary
9	chr3:23343600-23343800	Enhancers	Aorta	Aorta
10	chr3:23343600-23344400	Enhancers	Osteobl	bone
11	chr3:23343600-23344600	Enhancers	Adipose Nuclei	Adipose
12	chr3:23343600-23344800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:23343600-23344800	Enhancers	HSMM	muscle
14	chr3:23343600-23347800	Enhancers	HSMMtube	muscle

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