Variant report

Variant	rs7629742
Chromosome Location	chr3:102393235-102393236
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1391428	1.00[EUR][1000 genomes]
rs1498073	1.00[EUR][1000 genomes]
rs1498074	1.00[EUR][1000 genomes]
rs1511612	1.00[EUR][1000 genomes]
rs58165786	1.00[EUR][1000 genomes]
rs58703338	1.00[EUR][1000 genomes]
rs58794437	1.00[EUR][1000 genomes]
rs59584731	1.00[EUR][1000 genomes]
rs59692363	1.00[EUR][1000 genomes]
rs60381457	1.00[EUR][1000 genomes]
rs61629586	1.00[EUR][1000 genomes]
rs7628402	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1009392	chr3:102199756-102631205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv877228	chr3:102345638-102751470	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv591190	chr3:102345638-102946216	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv834776	chr3:102351486-102532042	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1000584	chr3:102358773-102923378	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv524557	chr3:102364297-102394152	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv915978	chr3:102386795-102949530	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102391200-102394800	Enhancers	Fetal Heart	heart
2	chr3:102392600-102393400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr3:102392600-102393400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:102392600-102393400	Enhancers	Left Ventricle	heart
5	chr3:102392600-102393800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:102392600-102393800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:102392600-102393800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:102392800-102393600	Weak transcription	Fetal Brain Male	brain
9	chr3:102392800-102393800	Active TSS	Liver	Liver
10	chr3:102393000-102393400	Enhancers	Fetal Brain Female	brain
11	chr3:102393000-102393400	Enhancers	Right Atrium	heart
12	chr3:102393000-102393600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:102393000-102398400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:102393000-102399000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:102393000-102399000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr3:102393000-102399200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr3:102393000-102399200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:102393000-102406400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr3:102393200-102398000	Weak transcription	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links