Variant report

Variant	rs7630344
Chromosome Location	chr3:23317542-23317543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11711072	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs11717397	0.89[EUR][1000 genomes]
rs12386394	0.86[ASN][1000 genomes]
rs12715046	0.85[ASN][1000 genomes]
rs12715048	0.95[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs13074192	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs13087861	0.95[CHB][hapmap];0.96[JPT][hapmap];0.94[ASN][1000 genomes]
rs1353322	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1532355	0.89[EUR][1000 genomes]
rs1692622	0.90[JPT][hapmap]
rs2884731	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2884787	0.81[AFR][1000 genomes]
rs4858069	0.95[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs4858074	0.95[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs4858505	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs55895449	0.86[AFR][1000 genomes]
rs6762615	0.89[AFR][1000 genomes]
rs6766166	0.82[AFR][1000 genomes]
rs6771053	0.82[AFR][1000 genomes]
rs6773311	0.81[AFR][1000 genomes]
rs6795968	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6797467	0.82[AFR][1000 genomes]
rs716456	0.95[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs7374774	0.81[ASN][1000 genomes]
rs7428484	0.89[AFR][1000 genomes]
rs7613969	0.89[AFR][1000 genomes]
rs7614667	0.81[ASN][1000 genomes]
rs7636536	0.81[AFR][1000 genomes]
rs7638278	0.81[AFR][1000 genomes]
rs903518	0.87[AFR][1000 genomes]
rs952134	0.95[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs9820922	0.92[ASN][1000 genomes]
rs9821419	0.84[ASN][1000 genomes]
rs9825835	0.87[AFR][1000 genomes]
rs9836574	0.91[JPT][hapmap]
rs9841518	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23295200-23321800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:23298800-23336600	Weak transcription	Thymus	Thymus
3	chr3:23302400-23321000	Weak transcription	Pancreas	Pancrea
4	chr3:23305600-23318400	Weak transcription	Brain Substantia Nigra	brain
5	chr3:23314400-23319400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:23314400-23330400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:23314600-23318600	Weak transcription	Fetal Kidney	kidney
8	chr3:23315400-23321800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:23315800-23318400	Weak transcription	A549	lung
10	chr3:23315800-23320000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:23316800-23317600	Enhancers	Brain Hippocampus Middle	brain
12	chr3:23316800-23317600	Enhancers	Psoas Muscle	Psoas
13	chr3:23316800-23328000	Weak transcription	Primary B cells from cord blood	blood
14	chr3:23317000-23320600	Weak transcription	Brain Angular Gyrus	brain
15	chr3:23317000-23320800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:23317000-23324400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr3:23317400-23317600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr3:23317400-23317600	Enhancers	Right Ventricle	heart
19	chr3:23317400-23318600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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