Variant report

Variant	rs7631052
Chromosome Location	chr3:81866235-81866236
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11127740	0.96[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs11127742	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11707026	1.00[ASW][hapmap];0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs11711024	0.90[EUR][1000 genomes]
rs11711331	0.87[CHB][hapmap];0.86[GIH][hapmap];0.88[TSI][hapmap]
rs11712243	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11715625	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11915042	0.80[EUR][1000 genomes]
rs12152272	0.90[EUR][1000 genomes]
rs13062741	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[EUR][1000 genomes]
rs13065281	0.91[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs13072957	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs13073613	0.96[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes]
rs13074632	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13075250	0.87[EUR][1000 genomes]
rs13079104	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes]
rs13080520	0.81[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes]
rs13083476	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13088000	0.80[EUR][1000 genomes]
rs13092157	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13099615	0.95[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap]
rs1464790	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1464791	0.81[EUR][1000 genomes]
rs1524557	0.89[EUR][1000 genomes]
rs17019299	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1851930	0.84[EUR][1000 genomes]
rs2053805	0.93[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs2229519	1.00[ASW][hapmap];0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.84[LWK][hapmap];0.84[MEX][hapmap];0.85[MKK][hapmap];0.88[TSI][hapmap];0.95[YRI][hapmap]
rs2873054	0.82[EUR][1000 genomes]
rs3755713	0.93[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3772882	0.82[GIH][hapmap]
rs3772883	0.82[GIH][hapmap]
rs3772884	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3772891	0.86[CHB][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap]
rs3772896	0.82[CEU][hapmap]
rs3821548	0.83[CEU][hapmap];0.86[GIH][hapmap];0.88[TSI][hapmap]
rs3821551	0.96[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs3821552	0.91[CEU][hapmap];0.90[YRI][hapmap]
rs3849570	0.82[CHB][hapmap];0.86[GIH][hapmap];0.88[TSI][hapmap]
rs3849571	0.83[CEU][hapmap];0.82[CHB][hapmap]
rs3943556	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs4411908	0.82[GIH][hapmap]
rs6548773	0.80[EUR][1000 genomes]
rs6765917	0.82[EUR][1000 genomes]
rs6792696	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6795133	0.93[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.95[YRI][hapmap]
rs6804587	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6809528	0.80[EUR][1000 genomes]
rs7620240	0.83[CEU][hapmap];0.84[GIH][hapmap];0.88[TSI][hapmap]
rs7634258	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs7641973	0.81[EUR][1000 genomes]
rs7642112	0.91[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap]
rs7648245	0.90[EUR][1000 genomes]
rs9826270	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81852400-81872200	Weak transcription	Left Ventricle	heart
2	chr3:81864600-81867600	Flanking Active TSS	Dnd41	blood
3	chr3:81864800-81867000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:81865000-81867400	Enhancers	Fetal Thymus	thymus
5	chr3:81865200-81866800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:81865200-81867000	Enhancers	Liver	Liver
7	chr3:81865400-81866400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:81865400-81866800	Enhancers	NHDF-Ad	bronchial
9	chr3:81865400-81867000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:81865600-81866400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:81865600-81866400	Enhancers	Fetal Lung	lung
12	chr3:81865600-81866600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:81865600-81866800	Flanking Active TSS	GM12878-XiMat	blood
14	chr3:81865800-81866400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:81865800-81866400	Enhancers	Fetal Brain Male	brain
16	chr3:81865800-81866400	Enhancers	Fetal Muscle Leg	muscle
17	chr3:81865800-81866400	Enhancers	Psoas Muscle	Psoas
18	chr3:81866000-81866400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr3:81866000-81866400	Active TSS	Brain Anterior Caudate	brain
20	chr3:81866000-81866400	Enhancers	Fetal Stomach	stomach
21	chr3:81866000-81866400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr3:81866000-81866400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr3:81866000-81866600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr3:81866000-81867200	Enhancers	Pancreas	Pancrea
25	chr3:81866200-81866400	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr3:81866200-81866400	Active TSS	Brain Hippocampus Middle	brain
27	chr3:81866200-81866800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:81866200-81866800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:81866200-81867400	Enhancers	Thymus	Thymus
30	chr3:81866200-81867600	Enhancers	Primary T cells from cord blood	blood

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