Variant report
Variant | rs7631738 |
---|---|
Chromosome Location | chr3:22610981-22610982 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1074226 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1111558 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1349270 | 0.86[EUR][1000 genomes] |
rs1449910 | 0.89[AFR][1000 genomes];0.80[EUR][1000 genomes] |
rs1531160 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1562742 | 0.82[EUR][1000 genomes] |
rs1579984 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1584551 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1585346 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1599121 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs5006371 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6550700 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6550701 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs716736 | 0.85[AFR][1000 genomes] |
rs977612 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs9820672 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs9836096 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs9873532 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv460477 | chr3:22532660-22920246 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv589941 | chr3:22532660-22920246 | Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv1014828 | chr3:22554271-23033498 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv997515 | chr3:22560733-22612794 | Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv1012343 | chr3:22560733-22811382 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | nsv589944 | chr3:22590688-22631593 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | n/a |
7 | nsv589946 | chr3:22600086-22865347 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:22610200-22611200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr3:22610600-22611000 | Weak transcription | HMEC | breast |