Variant report

Variant	rs7632253
Chromosome Location	chr3:85151526-85151527
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11127881	0.80[AMR][1000 genomes]
rs1376937	0.90[AMR][1000 genomes]
rs17022413	0.81[YRI][hapmap];0.90[AMR][1000 genomes]
rs17022521	0.90[AMR][1000 genomes]
rs17022531	0.90[AMR][1000 genomes]
rs17022571	0.90[AMR][1000 genomes]
rs1901545	0.90[AMR][1000 genomes]
rs2101343	0.91[AMR][1000 genomes]
rs2167605	0.80[AMR][1000 genomes]
rs28658170	0.90[AMR][1000 genomes]
rs28706252	0.90[AMR][1000 genomes]
rs41495948	1.00[AMR][1000 genomes]
rs56701506	0.91[AMR][1000 genomes]
rs57628546	0.90[AMR][1000 genomes]
rs58051057	0.90[AMR][1000 genomes]
rs58222692	0.90[AMR][1000 genomes]
rs59147667	0.81[AFR][1000 genomes]
rs59523340	0.83[AMR][1000 genomes]
rs59867516	0.90[AMR][1000 genomes]
rs59905205	0.90[AMR][1000 genomes]
rs59907126	0.90[AMR][1000 genomes]
rs60184399	0.90[AMR][1000 genomes]
rs60222151	0.90[AMR][1000 genomes]
rs60319509	0.90[AMR][1000 genomes]
rs61212713	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6770568	0.91[AMR][1000 genomes]
rs6783617	0.91[AMR][1000 genomes]
rs6791040	0.80[AMR][1000 genomes]
rs6804299	0.90[AMR][1000 genomes]
rs6809971	0.91[AMR][1000 genomes]
rs72903365	0.90[AMR][1000 genomes]
rs72903370	0.90[AMR][1000 genomes]
rs72903381	0.90[AMR][1000 genomes]
rs72903386	1.00[AMR][1000 genomes]
rs72905240	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905270	0.91[AMR][1000 genomes]
rs72905294	0.90[AMR][1000 genomes]
rs72905295	0.90[AMR][1000 genomes]
rs72907103	0.90[AMR][1000 genomes]
rs72907149	0.90[AMR][1000 genomes]
rs72907158	0.90[AMR][1000 genomes]
rs72907161	0.90[AMR][1000 genomes]
rs72907167	0.90[AMR][1000 genomes]
rs72907169	0.90[AMR][1000 genomes]
rs72907192	0.90[AMR][1000 genomes]
rs72909170	0.80[AMR][1000 genomes]
rs72909172	0.80[AMR][1000 genomes]
rs72909174	0.80[AMR][1000 genomes]
rs72909176	0.80[AMR][1000 genomes]
rs7614097	0.90[AMR][1000 genomes]
rs7643603	0.90[AMR][1000 genomes]
rs7644008	0.90[AMR][1000 genomes]
rs7649410	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9917693	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877093	chr3:85101501-85194054	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590897	chr3:85122624-85187085	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877094	chr3:85124697-85253981	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85150000-85151600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:85150600-85152200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:85151000-85151600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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