Variant report

Variant	rs7632648
Chromosome Location	chr3:105200156-105200157
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16851323	1.00[AMR][1000 genomes]
rs35248527	1.00[AMR][1000 genomes]
rs55820772	1.00[AFR][1000 genomes]
rs55866944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55924889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56236143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58474331	1.00[AMR][1000 genomes]
rs58999138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6437596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6437597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6437598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6765665	1.00[AMR][1000 genomes]
rs6793359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7618851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7632662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7640268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7643467	1.00[AFR][1000 genomes]
rs7646694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv829650	chr3:105070893-105255036	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534224	chr3:105141696-105404293	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105191400-105200600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:105193000-105209000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:105193000-105215400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:105193200-105209400	Weak transcription	HSMM	muscle
5	chr3:105193200-105209400	Weak transcription	NH-A	brain
6	chr3:105193200-105213600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:105198600-105200600	Enhancers	Brain Substantia Nigra	brain
8	chr3:105199000-105200200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:105199200-105200200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:105199200-105200200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr3:105199400-105200200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:105199400-105200200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:105199400-105200200	Enhancers	Brain Angular Gyrus	brain
14	chr3:105199600-105200200	Enhancers	Brain Hippocampus Middle	brain
15	chr3:105199600-105200400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:105199800-105200400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:105199800-105200400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:105199800-105200400	Enhancers	Brain Cingulate Gyrus	brain
19	chr3:105200000-105200200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:105200000-105200200	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr3:105200000-105209400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:105200000-105209400	Weak transcription	Muscle Satellite Cultured Cells	--

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