Variant report

Variant	rs7635332
Chromosome Location	chr3:81918699-81918700
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13314900	0.91[CEU][hapmap]
rs13322916	0.86[CEU][hapmap]
rs13326721	0.90[CEU][hapmap]
rs1524556	0.81[ASN][1000 genomes]
rs17019364	0.85[ASN][1000 genomes]
rs17019369	0.85[ASN][1000 genomes]
rs1851922	0.84[EUR][1000 genomes]
rs1851924	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1973802	0.81[EUR][1000 genomes]
rs2316043	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2680275	0.82[EUR][1000 genomes]
rs2680276	0.87[CEU][hapmap]
rs3772886	0.87[CEU][hapmap]
rs3772901	0.81[CEU][hapmap]
rs3849573	0.81[CEU][hapmap]
rs61156634	0.81[ASN][1000 genomes]
rs61540531	0.85[ASN][1000 genomes]
rs6765293	0.82[ASN][1000 genomes]
rs6768673	0.84[EUR][1000 genomes]
rs6776410	0.87[CEU][hapmap]
rs6778413	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785740	0.82[EUR][1000 genomes]
rs6791629	0.81[EUR][1000 genomes]
rs6791857	0.85[ASN][1000 genomes]
rs6798822	0.82[EUR][1000 genomes]
rs6804613	0.81[EUR][1000 genomes]
rs7611917	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623056	0.87[CEU][hapmap]
rs7644425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9812141	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812505	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9813371	0.93[CEU][hapmap]
rs9825400	0.81[EUR][1000 genomes]
rs9827558	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9835279	0.84[EUR][1000 genomes]
rs9838598	0.81[EUR][1000 genomes]
rs9847076	0.81[CEU][hapmap]
rs9851559	0.93[CEU][hapmap]
rs9870979	0.81[EUR][1000 genomes]
rs9871474	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv441830	chr3:81909338-81923746	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7635332	OGT	trans	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81914000-81927000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:81914800-81921600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:81915800-81919600	Weak transcription	Psoas Muscle	Psoas
4	chr3:81917000-81921000	Enhancers	Liver	Liver
5	chr3:81918000-81919200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:81918600-81919000	Enhancers	HepG2	liver

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