Variant report

Variant	rs7637942
Chromosome Location	chr3:144202411-144202412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC9A9-2	chr3:144202378-144202999	refGeneNc_4352_NR_034032

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1036439	0.82[ASN][1000 genomes]
rs10490827	0.89[ASN][1000 genomes]
rs10935507	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12631899	0.89[ASN][1000 genomes]
rs12632855	0.88[ASN][1000 genomes]
rs12638468	0.94[ASN][1000 genomes]
rs12638544	0.93[ASN][1000 genomes]
rs12639461	0.89[ASN][1000 genomes]
rs13066453	0.82[ASN][1000 genomes]
rs13081974	0.93[ASN][1000 genomes]
rs1527238	0.82[ASN][1000 genomes]
rs1657010	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1815189	0.80[ASN][1000 genomes]
rs2117004	0.81[ASN][1000 genomes]
rs2717387	0.82[EUR][1000 genomes]
rs34130084	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4290842	0.93[ASN][1000 genomes]
rs4337676	0.82[ASN][1000 genomes]
rs4398472	0.82[ASN][1000 genomes]
rs4408907	0.82[ASN][1000 genomes]
rs4479640	0.82[ASN][1000 genomes]
rs4544660	0.82[ASN][1000 genomes]
rs4568182	0.82[ASN][1000 genomes]
rs4594657	0.82[ASN][1000 genomes]
rs4681125	0.82[ASN][1000 genomes]
rs4681126	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4681328	0.81[ASN][1000 genomes]
rs4681331	0.82[ASN][1000 genomes]
rs4681342	0.82[ASN][1000 genomes]
rs56096828	0.89[ASN][1000 genomes]
rs56178175	0.93[ASN][1000 genomes]
rs56191622	0.82[ASN][1000 genomes]
rs56228220	0.89[ASN][1000 genomes]
rs57393618	0.92[ASN][1000 genomes]
rs59900584	0.88[ASN][1000 genomes]
rs61641065	0.82[ASN][1000 genomes]
rs6440258	0.83[ASN][1000 genomes]
rs6799623	0.83[ASN][1000 genomes]
rs6800761	0.82[ASN][1000 genomes]
rs73009099	0.93[ASN][1000 genomes]
rs73871205	0.93[ASN][1000 genomes]
rs73871207	0.93[ASN][1000 genomes]
rs73871211	0.89[ASN][1000 genomes]
rs73871221	0.88[ASN][1000 genomes]
rs73871228	0.82[ASN][1000 genomes]
rs73875119	0.93[ASN][1000 genomes]
rs73875127	0.93[ASN][1000 genomes]
rs73875134	0.93[ASN][1000 genomes]
rs73875140	0.93[ASN][1000 genomes]
rs7615146	0.83[ASN][1000 genomes]
rs7616429	0.82[ASN][1000 genomes]
rs7628103	0.82[ASN][1000 genomes]
rs7630402	0.89[ASN][1000 genomes]
rs7634647	0.82[ASN][1000 genomes]
rs7636316	0.88[ASN][1000 genomes]
rs7650699	0.82[ASN][1000 genomes]
rs7653820	0.83[ASN][1000 genomes]
rs920146	0.91[ASN][1000 genomes]
rs9833354	0.83[ASN][1000 genomes]
rs9844730	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9866198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9866442	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9873732	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9878902	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2756108	chr3:144177836-144301659	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv877571	chr3:144188561-144291254	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144201800-144202800	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:144201800-144203400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:144201800-144203600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:144202000-144202600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:144202200-144203600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:144202400-144202600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:144202400-144203400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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