Variant report

Variant	rs763918
Chromosome Location	chr4:144193117-144193118
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144191423..144193797-chr4:144202159..144203758,2	MCF-7	breast:

Extended variants
information (count: 170 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs10000911	0.95[CEU][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10001113	0.85[ASN][1000 genomes]
rs10002867	0.85[ASN][1000 genomes]
rs10002888	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10003529	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10009906	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10010367	0.85[ASN][1000 genomes]
rs10011709	0.83[ASN][1000 genomes]
rs10012434	0.83[ASN][1000 genomes]
rs10012713	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs10015190	0.83[ASN][1000 genomes]
rs10015751	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10019249	0.83[ASN][1000 genomes]
rs10026015	0.85[ASN][1000 genomes]
rs10028434	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10028909	0.80[ASN][1000 genomes]
rs10029373	0.85[ASN][1000 genomes]
rs10029419	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10031363	0.85[ASN][1000 genomes]
rs10033104	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10155434	0.90[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1039762	0.85[ASN][1000 genomes]
rs1039763	0.85[ASN][1000 genomes]
rs10434185	0.95[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10519678	0.89[ASN][1000 genomes]
rs11100778	0.81[ASN][1000 genomes]
rs11100779	0.95[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs11100780	0.94[CHD][hapmap];0.83[ASN][1000 genomes]
rs11100781	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11100782	0.87[ASN][1000 genomes]
rs11100783	0.85[ASN][1000 genomes]
rs11724872	0.94[CHD][hapmap];0.85[ASN][1000 genomes]
rs11725565	0.85[ASN][1000 genomes]
rs11727441	0.85[ASN][1000 genomes]
rs11728962	0.82[ASN][1000 genomes]
rs11732484	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11737209	0.85[ASN][1000 genomes]
rs11933603	0.85[ASN][1000 genomes]
rs11940580	0.85[ASN][1000 genomes]
rs11947142	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12499485	0.87[ASN][1000 genomes]
rs12501994	1.00[CHD][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.89[ASN][1000 genomes]
rs12505142	0.89[ASN][1000 genomes]
rs12506120	0.94[ASN][1000 genomes]
rs12640698	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12643013	0.82[CHD][hapmap]
rs12649219	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13106497	0.85[ASN][1000 genomes]
rs13113047	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13114280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13116414	0.87[ASN][1000 genomes]
rs13118943	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13119330	0.89[ASN][1000 genomes]
rs13128884	0.85[ASN][1000 genomes]
rs13129434	0.80[ASN][1000 genomes]
rs13137362	0.80[ASN][1000 genomes]
rs13137565	0.95[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13138084	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13139457	0.85[ASN][1000 genomes]
rs13151561	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1440410	0.87[ASN][1000 genomes]
rs1440411	0.85[ASN][1000 genomes]
rs1440412	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1440414	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1440416	0.85[ASN][1000 genomes]
rs1440418	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1440419	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1470130	0.88[ASN][1000 genomes]
rs1605581	0.85[ASN][1000 genomes]
rs2010767	0.89[ASN][1000 genomes]
rs2119269	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165301	0.87[ASN][1000 genomes]
rs2165302	0.85[ASN][1000 genomes]
rs2323076	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2323077	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28470858	0.87[ASN][1000 genomes]
rs28592151	0.83[ASN][1000 genomes]
rs28649839	0.85[ASN][1000 genomes]
rs300894	0.86[CEU][hapmap]
rs300913	0.82[CEU][hapmap]
rs300914	0.82[CEU][hapmap]
rs300915	0.82[CEU][hapmap]
rs300917	0.82[CEU][hapmap]
rs300921	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs300924	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs300925	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs300927	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs300929	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs300934	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs300938	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs300939	0.85[ASN][1000 genomes]
rs300940	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs300941	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs300943	0.86[CEU][hapmap];0.83[CHD][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs300946	0.82[EUR][1000 genomes]
rs300947	0.84[EUR][1000 genomes]
rs300951	0.90[CEU][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs300953	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34168479	0.85[ASN][1000 genomes]
rs34342939	0.87[ASN][1000 genomes]
rs34664017	0.83[ASN][1000 genomes]
rs3910622	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4131029	0.87[ASN][1000 genomes]
rs4132266	0.94[CHD][hapmap];0.83[ASN][1000 genomes]
rs4234886	0.94[CHD][hapmap];0.85[ASN][1000 genomes]
rs4234887	0.87[ASN][1000 genomes]
rs4285045	0.95[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4290853	0.89[ASN][1000 genomes]
rs4336176	0.83[ASN][1000 genomes]
rs4407450	0.87[ASN][1000 genomes]
rs4413361	0.90[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4513514	0.85[ASN][1000 genomes]
rs4566607	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4574353	0.87[ASN][1000 genomes]
rs4579067	0.83[JPT][hapmap]
rs4582112	0.85[ASN][1000 genomes]
rs4637346	0.85[ASN][1000 genomes]
rs4690715	0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs4690775	0.83[ASN][1000 genomes]
rs4690777	0.87[ASN][1000 genomes]
rs4690778	0.83[ASN][1000 genomes]
rs4690779	0.85[ASN][1000 genomes]
rs4690780	0.88[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4690781	0.89[ASN][1000 genomes]
rs4690783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs534750	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57168887	0.87[ASN][1000 genomes]
rs587254	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs592349	0.83[EUR][1000 genomes]
rs632359	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6537152	0.80[ASN][1000 genomes]
rs6812522	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6816223	0.84[ASN][1000 genomes]
rs6818149	0.87[ASN][1000 genomes]
rs6820340	0.95[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6820538	0.85[ASN][1000 genomes]
rs6822299	0.89[ASN][1000 genomes]
rs6823434	0.80[ASN][1000 genomes]
rs6826771	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6827229	0.85[ASN][1000 genomes]
rs6828369	0.87[ASN][1000 genomes]
rs6832943	0.89[ASN][1000 genomes]
rs6833582	0.89[ASN][1000 genomes]
rs6839312	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6845478	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6845907	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6848475	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6856785	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72719159	0.83[ASN][1000 genomes]
rs72719160	0.83[ASN][1000 genomes]
rs72719163	0.83[ASN][1000 genomes]
rs72719173	0.82[ASN][1000 genomes]
rs72719179	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72719180	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7435424	0.94[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7436840	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7656276	0.83[ASN][1000 genomes]
rs7670439	0.83[ASN][1000 genomes]
rs7673827	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7675127	0.83[JPT][hapmap]
rs7680365	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7687417	0.83[ASN][1000 genomes]
rs7692813	0.95[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9308169	0.89[ASN][1000 genomes]
rs985619	0.87[ASN][1000 genomes]
rs9992676	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9996072	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9998017	0.95[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv880177	chr4:144174773-144214082	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs763918	SLC10A7	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144189800-144194400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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