Variant report

Variant	rs7641744
Chromosome Location	chr3:142994792-142994793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6771344	1.00[AMR][1000 genomes]
rs6806689	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142963600-142995400	Weak transcription	Primary T cells from cord blood	blood
2	chr3:142973000-143017600	Weak transcription	Primary B cells from cord blood	blood
3	chr3:142980800-142995800	Weak transcription	Fetal Thymus	thymus
4	chr3:142983000-143013000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr3:142984200-142996600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr3:142984800-143002800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:142985000-142999200	Weak transcription	Esophagus	oesophagus
8	chr3:142985000-143002200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:142985000-143002200	Weak transcription	Aorta	Aorta
10	chr3:142986200-143004400	Weak transcription	Brain Substantia Nigra	brain
11	chr3:142987000-143002200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:142987200-142995400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:142990800-142995800	Weak transcription	K562	blood
14	chr3:142992800-142995200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:142994000-142998200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr3:142994000-142998400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:142994200-142998200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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