Variant report

Variant	rs7646028
Chromosome Location	chr3:23255848-23255849
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:23245270..23247157-chr3:23255844..23257640,2	K562	blood:
2	chr3:23245657..23247808-chr3:23255813..23257344,2	K562	blood:
3	chr3:23255785..23258216-chr3:23259980..23262399,2	MCF-7	breast:
4	chr3:23243585..23246598-chr3:23255369..23258477,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182247	Chromatin interaction
ENSG00000233153	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17013009	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17013099	1.00[AMR][1000 genomes]
rs28548892	1.00[AMR][1000 genomes]
rs28641973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57747253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58879825	1.00[AMR][1000 genomes]
rs61636332	1.00[AMR][1000 genomes]
rs6768277	1.00[AMR][1000 genomes]
rs6795043	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138415	1.00[AMR][1000 genomes]
rs73138434	1.00[AMR][1000 genomes]
rs73138436	1.00[AMR][1000 genomes]
rs73149654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7634565	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7652287	1.00[AMR][1000 genomes]
rs9310716	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9681506	1.00[AMR][1000 genomes]
rs9809364	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9810378	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9811442	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9819566	1.00[AMR][1000 genomes]
rs9819788	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9821681	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9829577	1.00[AMR][1000 genomes]
rs9834737	1.00[AMR][1000 genomes]
rs9842159	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9845340	1.00[AMR][1000 genomes]
rs9861614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9878638	1.00[AMR][1000 genomes]
rs9879217	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23245800-23262800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:23246000-23260800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:23246200-23257200	Weak transcription	Ovary	ovary
4	chr3:23246200-23257400	Weak transcription	Left Ventricle	heart
5	chr3:23246200-23258800	Weak transcription	HSMM	muscle
6	chr3:23246200-23259000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:23246200-23259000	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:23246200-23259200	Weak transcription	NH-A	brain
9	chr3:23246200-23260600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:23246200-23264200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:23246400-23259400	Weak transcription	Osteobl	bone
12	chr3:23246400-23261200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr3:23246400-23273400	Weak transcription	Aorta	Aorta
14	chr3:23246600-23258800	Weak transcription	Fetal Lung	lung
15	chr3:23246600-23259000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:23246600-23259000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:23246600-23259200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:23246600-23259200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr3:23246600-23260000	Weak transcription	NHEK	skin
20	chr3:23246600-23260800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:23246600-23262400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr3:23246800-23259000	Weak transcription	NHLF	lung
23	chr3:23246800-23259800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:23247400-23258400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr3:23248200-23258400	Weak transcription	Brain Anterior Caudate	brain
26	chr3:23248200-23259000	Weak transcription	A549	lung
27	chr3:23248200-23260600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:23248800-23257200	Weak transcription	Brain Angular Gyrus	brain
29	chr3:23248800-23257400	Weak transcription	Brain Substantia Nigra	brain
30	chr3:23248800-23265800	Weak transcription	Primary T cells from cord blood	blood
31	chr3:23249000-23273400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:23249200-23257000	Weak transcription	Brain Hippocampus Middle	brain
33	chr3:23249400-23260600	Weak transcription	HSMMtube	muscle
34	chr3:23250400-23256200	Weak transcription	Fetal Thymus	thymus
35	chr3:23250400-23257400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr3:23251400-23258200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr3:23251600-23259200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr3:23251600-23260400	Weak transcription	HMEC	breast
39	chr3:23251600-23262800	Weak transcription	Adipose Nuclei	Adipose
40	chr3:23251800-23257000	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr3:23251800-23260600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:23251800-23260600	Weak transcription	Esophagus	oesophagus
43	chr3:23251800-23260800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr3:23252400-23258800	Weak transcription	GM12878-XiMat	blood
45	chr3:23252600-23258800	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr3:23252800-23260600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr3:23253400-23260800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr3:23253600-23258400	Weak transcription	Primary B cells from cord blood	blood
49	chr3:23255600-23257200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr3:23255600-23260600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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