Variant report

Variant	rs764858
Chromosome Location	chr11:56609866-56609867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11228790	0.91[ASN][1000 genomes]
rs11823625	0.92[ASN][1000 genomes]
rs488445	0.89[ASN][1000 genomes]
rs546954	0.88[ASN][1000 genomes]
rs547707	0.92[ASN][1000 genomes]
rs562063	0.89[ASN][1000 genomes]
rs572571	0.92[ASN][1000 genomes]
rs585989	0.85[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs652689	0.99[ASN][1000 genomes]
rs679124	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7105581	0.99[ASN][1000 genomes]
rs7941339	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048328	chr11:56471984-56649908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv2830406	chr11:56481955-56650124	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv468577	chr11:56503728-56704042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv555101	chr11:56503728-56704042	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv469960	chr11:56605222-56704042	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56608800-56610200	Enhancers	HMEC	breast
2	chr11:56609000-56610800	Enhancers	Fetal Lung	lung
3	chr11:56609000-56611000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:56609000-56611600	Enhancers	Stomach Mucosa	stomach
5	chr11:56609200-56610000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:56609200-56613800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:56609200-56614000	Weak transcription	Fetal Kidney	kidney
8	chr11:56609400-56610800	Enhancers	A549	lung
9	chr11:56609400-56613800	Weak transcription	NHEK	skin
10	chr11:56609800-56610800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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