Variant report

Variant	rs7649867
Chromosome Location	chr3:22401148-22401149
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12638680	0.89[ASN][1000 genomes]
rs1494218	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs28452093	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67216790	0.86[EUR][1000 genomes]
rs7635039	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7635394	0.84[EUR][1000 genomes]
rs7644804	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9821153	0.89[ASN][1000 genomes]
rs9844099	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9849136	0.85[AFR][1000 genomes]
rs9854657	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs9854991	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs9870287	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870829	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003085	chr3:21887971-22415107	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv432404	chr3:22000296-22433396	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1003211	chr3:22244883-22584229	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv536520	chr3:22244883-22584229	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv428082	chr3:22397625-22539817	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22393600-22402200	Weak transcription	Fetal Lung	lung
2	chr3:22399600-22402400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:22399600-22402600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:22400400-22402600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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