Variant report

Variant	rs7651128
Chromosome Location	chr3:118606927-118606928
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11716588	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718584	0.95[ASN][1000 genomes]
rs17465252	0.85[ASN][1000 genomes]
rs17465281	0.85[ASN][1000 genomes]
rs17491031	0.83[ASN][1000 genomes]
rs28454078	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866316	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35625542	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41470148	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55797028	0.83[ASN][1000 genomes]
rs7625631	0.93[ASN][1000 genomes]
rs7625642	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118601800-118609200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:118604000-118621400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:118604200-118609000	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:118604200-118621400	Weak transcription	Brain Angular Gyrus	brain
5	chr3:118604400-118607600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:118604400-118620000	Weak transcription	Brain Anterior Caudate	brain
7	chr3:118604400-118621400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:118604400-118621400	Weak transcription	Brain Substantia Nigra	brain
9	chr3:118604800-118607600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:118604800-118608600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:118606400-118613200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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