Variant report

Variant	rs7653333
Chromosome Location	chr3:81960024-81960025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:81959276..81960101-chr3:83977242..83977869,2	MCF-7	breast:
2	chr3:81959070..81960211-chr3:83572380..83573522,4	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1155277	0.82[CEU][hapmap]
rs11925940	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495343	0.80[EUR][1000 genomes]
rs12632474	0.82[EUR][1000 genomes]
rs12636122	0.83[EUR][1000 genomes]
rs13069237	0.82[EUR][1000 genomes]
rs13070174	0.82[EUR][1000 genomes]
rs1404297	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1829967	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1851917	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1851919	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1851923	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1851925	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1851929	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1971426	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1973800	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1973801	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1973803	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1997002	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2030708	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2244294	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2252530	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2594547	0.84[CEU][hapmap];0.88[JPT][hapmap]
rs2594549	0.82[CEU][hapmap]
rs2594551	0.84[CEU][hapmap];0.88[JPT][hapmap]
rs2594553	0.85[CEU][hapmap]
rs2594562	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs2680245	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs2680257	0.82[CEU][hapmap]
rs2680260	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2680274	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2680280	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2691077	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2691078	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2691079	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2691080	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2691083	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2691085	0.81[AMR][1000 genomes]
rs2691089	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2691093	0.81[CEU][hapmap]
rs4266214	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4273393	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4296616	0.82[EUR][1000 genomes]
rs4314192	0.83[EUR][1000 genomes]
rs4401382	0.83[EUR][1000 genomes]
rs4462992	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4465962	0.82[EUR][1000 genomes]
rs4465963	0.82[EUR][1000 genomes]
rs4465966	0.83[EUR][1000 genomes]
rs4479621	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4482683	0.82[EUR][1000 genomes]
rs4488862	0.82[EUR][1000 genomes]
rs4557185	0.81[EUR][1000 genomes]
rs4572795	0.82[EUR][1000 genomes]
rs6548780	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6548788	0.83[EUR][1000 genomes]
rs6770740	0.83[EUR][1000 genomes]
rs6774438	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6797340	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6803932	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs6808112	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7427000	0.82[EUR][1000 genomes]
rs7430321	0.83[EUR][1000 genomes]
rs7611902	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7626596	0.82[EUR][1000 genomes]
rs7640558	0.83[EUR][1000 genomes]
rs9309882	0.83[EUR][1000 genomes]
rs9309883	0.82[EUR][1000 genomes]
rs950904	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs957670	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810377	0.90[EUR][1000 genomes]
rs9816321	0.81[EUR][1000 genomes]
rs9822266	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9830303	0.83[EUR][1000 genomes]
rs9840924	0.82[EUR][1000 genomes]
rs9859613	0.82[EUR][1000 genomes]
rs9860204	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9865552	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81958000-81963200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:81959000-81961600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr3:81959400-81960400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr3:81959600-81960600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:81959800-81960200	Weak transcription	Adipose Nuclei	Adipose
6	chr3:81960000-81960600	Enhancers	Primary monocytes fromperipheralblood	blood

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