Variant report

Variant	rs7654096
Chromosome Location	chr4:143861738-143861739
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs55675363	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55920161	1.00[AMR][1000 genomes]
rs55947218	1.00[AMR][1000 genomes]
rs56330901	1.00[AMR][1000 genomes]
rs57206134	1.00[AMR][1000 genomes]
rs57770652	1.00[AMR][1000 genomes]
rs58070744	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58269423	1.00[AMR][1000 genomes]
rs58306079	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58701532	1.00[AMR][1000 genomes]
rs60285299	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60387330	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61538113	1.00[AMR][1000 genomes]
rs61741556	1.00[AMR][1000 genomes]
rs73850569	1.00[AMR][1000 genomes]
rs73850572	1.00[AMR][1000 genomes]
rs73850573	1.00[AMR][1000 genomes]
rs73850574	1.00[AMR][1000 genomes]
rs73850575	1.00[AMR][1000 genomes]
rs73850577	1.00[AMR][1000 genomes]
rs73850580	1.00[AMR][1000 genomes]
rs73850581	1.00[AMR][1000 genomes]
rs73850587	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850588	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850592	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850620	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850621	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850622	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850641	1.00[AMR][1000 genomes]
rs73850662	1.00[AMR][1000 genomes]
rs73853610	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7668584	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7690525	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880175	chr4:143779613-143892252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830102	chr4:143820268-143953611	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143859800-143861800	Weak transcription	Fetal Heart	heart
2	chr4:143861200-143862200	Enhancers	Brain Germinal Matrix	brain
3	chr4:143861400-143862000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:143861400-143862200	Enhancers	Brain Hippocampus Middle	brain
5	chr4:143861400-143862200	Enhancers	Fetal Brain Female	brain
6	chr4:143861400-143862400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr4:143861600-143862000	Enhancers	Rectal Smooth Muscle	rectum
8	chr4:143861600-143862200	Enhancers	Fetal Muscle Leg	muscle
9	chr4:143861600-143862200	Enhancers	Stomach Smooth Muscle	stomach
10	chr4:143861600-143862800	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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