Variant report

Variant	rs7661341
Chromosome Location	chr4:48276502-48276503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:48270643..48273355-chr4:48275449..48277966,4	K562	blood:
2	chr4:48274201..48276645-chr4:48276828..48280429,3	K562	blood:
3	chr4:48270165..48273993-chr4:48275516..48278513,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135605	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12499164	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12510551	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12640519	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12645266	0.84[AMR][1000 genomes]
rs13127675	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1876835	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2055800	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2136502	0.82[AFR][1000 genomes]
rs2352595	0.92[AMR][1000 genomes]
rs2464503	0.92[AMR][1000 genomes]
rs2704411	0.92[AMR][1000 genomes]
rs309886	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs309888	0.82[AFR][1000 genomes]
rs309889	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs309893	0.84[AMR][1000 genomes]
rs309894	0.84[AMR][1000 genomes]
rs309895	0.84[AMR][1000 genomes]
rs409176	0.84[AMR][1000 genomes]
rs4095347	0.86[AFR][1000 genomes]
rs419804	0.84[AMR][1000 genomes]
rs4235154	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs436979	0.84[AMR][1000 genomes]
rs4478160	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4695367	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4695368	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6447624	0.84[AMR][1000 genomes]
rs6819233	0.84[AMR][1000 genomes]
rs937952	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482316	chr4:48151953-48338746	Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv2763359	chr4:48189710-48290233	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
4	nsv1006610	chr4:48209294-48415387	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv537085	chr4:48209294-48415387	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv470032	chr4:48251915-48312389	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48272600-48276600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:48272800-48277200	Weak transcription	Fetal Lung	lung
3	chr4:48273200-48277200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:48273200-48277600	Weak transcription	Fetal Intestine Large	intestine
5	chr4:48273200-48279400	Weak transcription	Primary T cells from cord blood	blood
6	chr4:48273400-48281600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:48273600-48276800	Weak transcription	K562	blood
8	chr4:48273600-48279400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr4:48273800-48277200	Weak transcription	Thymus	Thymus
10	chr4:48273800-48281600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:48274000-48276800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:48274200-48277200	Weak transcription	Fetal Thymus	thymus
13	chr4:48275000-48277200	Weak transcription	GM12878-XiMat	blood
14	chr4:48276400-48277400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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