Variant report

Variant	rs766162
Chromosome Location	chr4:124427746-124427747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:124427654..124430498-chr4:124440041..124442274,2	MCF-7	breast:
2	chr4:124426846..124429708-chr4:124483364..124486101,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12503335	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1452732	0.84[ASN][1000 genomes]
rs4365740	0.82[ASN][1000 genomes]
rs4833280	0.84[ASN][1000 genomes]
rs4833925	0.91[ASN][1000 genomes]
rs6534414	0.83[EUR][1000 genomes]
rs6832678	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6852763	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7664219	0.94[ASN][1000 genomes]
rs7681029	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006945	chr4:124206328-124503863	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv537240	chr4:124206328-124503863	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124426200-124427800	Active TSS	Colon Smooth Muscle	Colon
2	chr4:124426200-124427800	Active TSS	Right Atrium	heart
3	chr4:124426200-124428000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr4:124426200-124428000	Active TSS	Brain Anterior Caudate	brain
5	chr4:124426400-124427800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr4:124426400-124427800	Active TSS	Brain Angular Gyrus	brain
7	chr4:124426400-124427800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:124426400-124428000	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr4:124426400-124428000	Active TSS	Brain Substantia Nigra	brain
10	chr4:124427000-124427800	Flanking Active TSS	Fetal Muscle Trunk	muscle
11	chr4:124427000-124427800	Enhancers	Spleen	Spleen
12	chr4:124427000-124427800	Flanking Active TSS	HepG2	liver
13	chr4:124427000-124428000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr4:124427200-124427800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:124427200-124427800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr4:124427200-124427800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:124427200-124427800	Flanking Active TSS	Brain Germinal Matrix	brain
18	chr4:124427200-124427800	Flanking Active TSS	Fetal Lung	lung
19	chr4:124427200-124427800	Flanking Active TSS	Fetal Muscle Leg	muscle
20	chr4:124427200-124427800	Flanking Active TSS	Stomach Mucosa	stomach
21	chr4:124427200-124427800	Flanking Active TSS	NH-A	brain
22	chr4:124427200-124428000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:124427200-124428000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr4:124427200-124428000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr4:124427200-124428000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr4:124427200-124428000	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr4:124427200-124428400	Weak transcription	HMEC	breast
28	chr4:124427400-124427800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
29	chr4:124427400-124427800	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr4:124427400-124427800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr4:124427400-124427800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:124427400-124427800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:124427400-124427800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr4:124427400-124427800	Enhancers	Esophagus	oesophagus
35	chr4:124427400-124427800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr4:124427400-124427800	Flanking Active TSS	Fetal Brain Female	brain
37	chr4:124427400-124427800	Enhancers	Fetal Heart	heart
38	chr4:124427400-124427800	Flanking Active TSS	Fetal Intestine Large	intestine
39	chr4:124427400-124427800	Flanking Active TSS	Fetal Intestine Small	intestine
40	chr4:124427400-124427800	Flanking Active TSS	Fetal Stomach	stomach
41	chr4:124427400-124427800	Enhancers	Lung	lung
42	chr4:124427400-124427800	Enhancers	Pancreas	Pancrea
43	chr4:124427400-124427800	Enhancers	Placenta Amnion	Placenta Amnion
44	chr4:124427400-124427800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr4:124427400-124427800	Enhancers	Thymus	Thymus
46	chr4:124427400-124428000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
47	chr4:124427400-124428000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr4:124427400-124428200	Enhancers	Primary B cells from cord blood	blood
49	chr4:124427400-124428400	Enhancers	Primary B cells from peripheral blood	blood
50	chr4:124427400-124429200	Enhancers	Fetal Thymus	thymus

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