Variant report

Variant	rs7661844
Chromosome Location	chr4:87468625-87468626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:87468622-87468672	U87	brain:	n/a
2	chr4:87468622-87468672	HRCEpiC	kidney:	n/a
3	chr4:87468622-87468672	BJ	skin:	n/a
4	chr4:87468622-87468672	Jurkat	blood:	n/a
5	chr4:87468622-87468672	NHBE	bronchial:	n/a
6	chr4:87468622-87468672	Hepatocyte	liver:	n/a
7	chr4:87468622-87468672	AoSMC	blood vessel:	n/a
8	chr4:87468622-87468672	AG09319	gingival:	n/a
9	chr4:87468622-87468672	A549	lung:	n/a
10	chr4:87468622-87468672	HRPEpiC	eye:	n/a
11	chr4:87468622-87468672	IMR90	lung:	fetal
12	chr4:87468622-87468672	NB4	blood:	n/a
13	chr4:87468622-87468672	LNCaP	prostate:	n/a
14	chr4:87468622-87468672	SAEC	small airway:	n/a
15	chr4:87468622-87468672	HPAEpiC	pulmonary alveolar:	n/a
16	chr4:87468622-87468672	PFSK-1	brain:	n/a
17	chr4:87468622-87468672	SKMC	muscle:	n/a
18	chr4:87468622-87468672	SK-N-SH	brain:	n/a
19	chr4:87468622-87468672	NHDF-neo	bronchial:	n/a
20	chr4:87468622-87468672	HL-60	blood:	n/a
21	chr4:87468622-87468672	AG04449	skin:	fetal
22	chr4:87468622-87468672	MCF10A-Er-Src	breast:	n/a
23	chr4:87468622-87468672	GM12892	blood:	n/a
24	chr4:87468622-87468672	GM12878	blood:	n/a
25	chr4:87468622-87468672	AG09309	skin:	n/a
26	chr4:87468622-87468672	SK-N-SH_RA	brain:	n/a
27	chr4:87468622-87468672	HRE	kidney:	n/a
28	chr4:87468622-87468672	AG04450	lung:	fetal
29	chr4:87468622-87468672	HEEpiC	esophagus:	n/a
30	chr4:87468622-87468672	MCF-7	breast:	n/a
31	chr4:87468622-87468672	BE2_C	brain:	n/a
32	chr4:87468622-87468672	HIPEpiC	eye:	n/a
33	chr4:87468622-87468672	ProgFib	skin:	n/a
34	chr4:87468622-87468672	CMK	blood:	n/a
35	chr4:87468622-87468672	HEK293	kidney:	embryo
36	chr4:87468622-87468672	HepG2	liver:	n/a
37	chr4:87468622-87468672	GM12891	blood:	n/a
38	chr4:87468622-87468672	T-47D	breast:	n/a
39	chr4:87468622-87468672	HUVEC	blood vessel:	n/a
40	chr4:87468622-87468672	Caco-2	colon:	n/a
41	chr4:87468622-87468672	GM19239	blood:	n/a
42	chr4:87468622-87468672	Hela-S3	cervix:	n/a
43	chr4:87468622-87468672	HCM	heart:	n/a
44	chr4:87468622-87468672	HMEC	breast:	n/a
45	chr4:87468622-87468672	K562	blood:	n/a
46	chr4:87468622-87468672	ECC-1	luminal epithelium:	n/a
47	chr4:87468622-87468672	ovcar-3	ovarian:	n/a
48	chr4:87468622-87468672	SK-N-MC	brain:	n/a
49	chr4:87468622-87468672	HAEpiC	amniotic membrane:	n/a
50	chr4:87468622-87468672	HNPCEpiC	eye:	n/a

No data

Variant related genes	Relation type
MIR4452	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4478147	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1012836	chr4:87279206-87643558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	esv2757071	chr4:87417291-87689533	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	esv2759264	chr4:87417291-87689533	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87462600-87474000	Weak transcription	Ovary	ovary
2	chr4:87462600-87478000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:87465200-87470400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:87465400-87469800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:87465400-87470800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:87465400-87472000	Weak transcription	Brain Anterior Caudate	brain
7	chr4:87465400-87473800	Weak transcription	HMEC	breast
8	chr4:87465600-87470400	Weak transcription	Osteobl	bone
9	chr4:87465800-87470400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:87466200-87478200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:87466600-87470000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:87466600-87479400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:87468000-87468800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:87468200-87468800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:87468200-87468800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:87468600-87468800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:87468600-87470800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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