Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17004949	1.00[EUR][1000 genomes]
rs17004951	1.00[EUR][1000 genomes]
rs17004981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55906439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56015804	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58711748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59437917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59718772	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59881454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61327507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6847820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6849086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829105	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73829106	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832425	1.00[EUR][1000 genomes]
rs73832427	1.00[EUR][1000 genomes]
rs73832429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7656162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7669743	1.00[EUR][1000 genomes]
rs7690311	1.00[EUR][1000 genomes]
rs7693520	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7699161	1.00[EUR][1000 genomes]
rs966860	1.00[EUR][1000 genomes]
rs966861	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3518601	chr4:81523238-81831941	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3518602	chr4:81523354-81831976	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81625200-81634400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:81626800-81634200	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:81627400-81633000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:81629000-81631400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr4:81629200-81631600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr4:81629200-81632200	Enhancers	Primary T cells from cord blood	blood
7	chr4:81629400-81631400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr4:81631000-81640800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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