Variant report

Variant	rs7663475
Chromosome Location	chr4:143757864-143757865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143757278..143761783-chr4:143763336..143768943,6	MCF-7	breast:
2	chr4:143393242..143395860-chr4:143757386..143759845,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1031104	0.90[CHB][hapmap]
rs10857399	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs11736709	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11939835	0.80[ASN][1000 genomes]
rs11943397	0.81[CHB][hapmap]
rs1441411	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1441417	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1443187	0.86[CHB][hapmap]
rs1444949	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17016768	1.00[CHB][hapmap]
rs1899565	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs1992652	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2120158	0.81[CHB][hapmap]
rs28416530	0.80[ASN][1000 genomes]
rs331945	1.00[CHB][hapmap]
rs4690729	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4690730	0.86[CEU][hapmap];0.80[ASN][1000 genomes]
rs58445560	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60263370	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6537129	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6813785	0.80[ASN][1000 genomes]
rs6822703	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823627	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6828896	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6830053	0.80[CHB][hapmap]
rs6838663	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6839158	0.90[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs6846609	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72728681	0.85[ASN][1000 genomes]
rs72728694	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728700	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72730409	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73850583	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7656375	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7666140	1.00[CHB][hapmap]
rs7668263	0.80[ASN][1000 genomes]
rs7685997	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7695461	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv292010	chr4:143757442-143757872	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143740200-143765800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143750600-143760000	Weak transcription	Left Ventricle	heart
3	chr4:143750800-143762200	Weak transcription	Fetal Heart	heart
4	chr4:143753800-143761000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:143756600-143758800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:143756600-143761000	Weak transcription	Dnd41	blood
7	chr4:143757200-143759000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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