Variant report

Variant	rs7663556
Chromosome Location	chr4:81948125-81948126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:81948124-81948174	T-47D	breast:	n/a
2	chr4:81948124-81948174	HPAEpiC	pulmonary alveolar:	n/a
3	chr4:81948124-81948174	SK-N-SH	brain:	n/a
4	chr4:81948124-81948174	HAEpiC	amniotic membrane:	n/a
5	chr4:81948124-81948174	IMR90	lung:	fetal
6	chr4:81948124-81948174	ProgFib	skin:	n/a
7	chr4:81948124-81948174	MCF-7	breast:	n/a
8	chr4:81948124-81948174	MCF10A-Er-Src	breast:	n/a
9	chr4:81948124-81948174	SKMC	muscle:	n/a
10	chr4:81948124-81948174	HCT-116	colon:	n/a
11	chr4:81948124-81948174	GM12891	blood:	n/a
12	chr4:81948124-81948174	HRE	kidney:	n/a
13	chr4:81948124-81948174	AG10803	skin:	n/a
14	chr4:81948124-81948174	NH-A	brain:	n/a
15	chr4:81948124-81948174	HRCEpiC	kidney:	n/a
16	chr4:81948124-81948174	NB4	blood:	n/a
17	chr4:81948124-81948174	HepG2	liver:	n/a
18	chr4:81948124-81948174	PANC-1	pancreas:	n/a
19	chr4:81948124-81948174	GM12878	blood:	n/a
20	chr4:81948124-81948174	HEK293	kidney:	embryo
21	chr4:81948124-81948174	AG09319	gingival:	n/a
22	chr4:81948124-81948174	H1-hESC	embryonic stem cell:	embryo
23	chr4:81948124-81948174	A549	lung:	n/a
24	chr4:81948124-81948174	HL-60	blood:	n/a
25	chr4:81948124-81948174	HUVEC	blood vessel:	n/a
26	chr4:81948124-81948174	HCPEpiC	choroid plexus:	n/a
27	chr4:81948124-81948174	HCF	heart:	n/a
28	chr4:81948124-81948174	PrEC	prostate:	n/a
29	chr4:81948124-81948174	PFSK-1	brain:	n/a
30	chr4:81948124-81948174	HIPEpiC	eye:	n/a
31	chr4:81948124-81948174	Jurkat	blood:	n/a
32	chr4:81948124-81948174	CMK	blood:	n/a
33	chr4:81948124-81948174	GM19239	blood:	n/a
34	chr4:81948124-81948174	ovcar-3	ovarian:	n/a
35	chr4:81948124-81948174	K562	blood:	n/a
36	chr4:81948124-81948174	NHBE	bronchial:	n/a
37	chr4:81948124-81948174	NHDF-neo	bronchial:	n/a
38	chr4:81948124-81948174	HCM	heart:	n/a
39	chr4:81948124-81948174	HMEC	breast:	n/a
40	chr4:81948124-81948174	GM06990	blood:	n/a
41	chr4:81948124-81948174	Hepatocyte	liver:	n/a
42	chr4:81948124-81948174	HEEpiC	esophagus:	n/a
43	chr4:81948124-81948174	HRPEpiC	eye:	n/a
44	chr4:81948124-81948174	GM12892	blood:	n/a
45	chr4:81948124-81948174	Caco-2	colon:	n/a
46	chr4:81948124-81948174	AG09309	skin:	n/a
47	chr4:81948124-81948174	U87	brain:	n/a
48	chr4:81948124-81948174	BE2_C	brain:	n/a
49	chr4:81948124-81948174	SAEC	small airway:	n/a
50	chr4:81948124-81948174	NT2-D1	testis:	n/a

No data

Variant related genes	Relation type
BMP3	CpG island

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1353387	0.89[JPT][hapmap]
rs1390319	0.89[JPT][hapmap]
rs17005024	0.94[EUR][1000 genomes]
rs58713718	0.81[ASN][1000 genomes]
rs6853852	1.00[EUR][1000 genomes]
rs72868564	0.82[ASN][1000 genomes]
rs72868565	0.82[ASN][1000 genomes]
rs72868572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7663564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3412549	chr4:81834479-81951850	Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81943800-81950000	Weak transcription	Stomach Smooth Muscle	stomach

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