Variant report

Variant	rs7667002
Chromosome Location	chr4:143547814-143547815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10002341	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs10519662	0.86[AFR][1000 genomes]
rs13435036	0.96[AFR][1000 genomes]
rs1373037	0.93[AFR][1000 genomes]
rs1425526	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs17016533	0.96[AFR][1000 genomes]
rs28497887	1.00[AFR][1000 genomes]
rs60395025	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850509	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143537000-143575800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143538800-143548800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:143547200-143548200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:143547400-143548000	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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