Variant report

Variant	rs7667183
Chromosome Location	chr4:143723571-143723572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10024696	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1031104	1.00[CHB][hapmap]
rs10519666	0.88[AMR][1000 genomes]
rs10857399	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11100754	0.92[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs11100760	0.82[EUR][1000 genomes]
rs11723982	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11724017	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11726381	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11933763	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11943397	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs11944455	0.81[CHB][hapmap]
rs12509304	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12640389	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12644329	0.87[EUR][1000 genomes]
rs13117185	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13141925	0.90[EUR][1000 genomes]
rs13435565	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1373031	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1373032	0.88[EUR][1000 genomes]
rs1441417	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs1441418	0.80[CEU][hapmap]
rs1443183	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1443185	0.87[EUR][1000 genomes]
rs1443186	0.87[EUR][1000 genomes]
rs1443187	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs1443191	0.81[JPT][hapmap]
rs1465962	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17016768	0.90[CHB][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes]
rs17016777	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17016779	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016789	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17732408	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17732791	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs179508	0.90[EUR][1000 genomes]
rs1822360	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1822361	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1838082	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1867214	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1899565	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs191762	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs1965828	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1992417	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1992418	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2017146	0.81[JPT][hapmap]
rs2120158	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs2165820	0.80[JPT][hapmap]
rs2589994	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28420913	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3113593	0.89[EUR][1000 genomes]
rs331939	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs331940	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs331942	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs331945	0.90[CHB][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.80[ASN][1000 genomes]
rs331948	0.91[EUR][1000 genomes]
rs331949	0.90[EUR][1000 genomes]
rs331950	0.90[EUR][1000 genomes]
rs331951	0.89[EUR][1000 genomes]
rs331953	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs331957	0.83[EUR][1000 genomes]
rs331963	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs331966	0.86[EUR][1000 genomes]
rs34442253	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34831472	0.90[AMR][1000 genomes]
rs4690699	0.92[CEU][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs4690726	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56011189	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6537124	0.92[CEU][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6537127	0.84[EUR][1000 genomes]
rs6537129	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs6811022	0.80[CEU][hapmap]
rs6813458	0.86[EUR][1000 genomes]
rs6816424	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6819498	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6830053	1.00[CHB][hapmap]
rs6831562	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6831927	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6839158	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6844306	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6845583	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6852570	0.92[CEU][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72728641	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72728649	0.80[AMR][1000 genomes]
rs72728651	0.80[AMR][1000 genomes]
rs72728654	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72728667	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728681	0.87[AMR][1000 genomes]
rs72728686	0.88[AMR][1000 genomes]
rs7376475	0.93[EUR][1000 genomes]
rs7656375	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs7663475	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs7666140	0.90[CHB][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs7668552	0.90[AMR][1000 genomes]
rs7668786	0.90[AMR][1000 genomes]
rs7679151	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7688275	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7695461	0.87[AMR][1000 genomes]
rs966457	0.90[EUR][1000 genomes]
rs978361	0.90[CHB][hapmap]
rs9994364	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143698800-143738600	Weak transcription	Aorta	Aorta
2	chr4:143709200-143732200	Weak transcription	Left Ventricle	heart
3	chr4:143718600-143736600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:143720200-143733200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:143722000-143724000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:143722200-143724000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:143722600-143723600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr4:143722600-143723600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:143722600-143723800	Enhancers	NHEK	skin
10	chr4:143722600-143724000	Enhancers	HMEC	breast
11	chr4:143723000-143723600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:143723000-143724000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:143723200-143723600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr4:143723200-143723600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:143723200-143723800	Enhancers	Dnd41	blood

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