Variant report

Variant	rs7667438
Chromosome Location	chr4:80135060-80135061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:80134202..80136141-chr4:80140133..80142135,2	K562	blood:
2	chr4:80129511..80131347-chr4:80133541..80135090,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10013555	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10032360	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10032363	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1026394	0.89[ASN][1000 genomes]
rs1080690	0.84[ASN][1000 genomes]
rs11098588	0.93[ASN][1000 genomes]
rs11098595	0.95[ASN][1000 genomes]
rs11098603	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098609	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs11732616	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735553	0.95[ASN][1000 genomes]
rs12502459	0.90[ASN][1000 genomes]
rs12504676	0.95[ASN][1000 genomes]
rs12643994	0.93[ASN][1000 genomes]
rs12644018	0.90[ASN][1000 genomes]
rs12648205	0.95[ASN][1000 genomes]
rs12650537	0.84[ASN][1000 genomes]
rs13143413	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13145326	0.95[ASN][1000 genomes]
rs1385055	0.91[ASN][1000 genomes]
rs1455313	0.90[ASN][1000 genomes]
rs17003689	0.82[ASN][1000 genomes]
rs17003690	0.82[ASN][1000 genomes]
rs1840480	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1955232	0.84[ASN][1000 genomes]
rs28528138	0.83[ASN][1000 genomes]
rs4246718	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[ASN][1000 genomes]
rs4302482	0.89[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs4385093	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4386626	0.95[ASN][1000 genomes]
rs4425403	0.95[ASN][1000 genomes]
rs4470657	0.95[ASN][1000 genomes]
rs4502706	0.95[ASN][1000 genomes]
rs4519821	0.95[ASN][1000 genomes]
rs4527507	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4530664	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4535355	0.95[ASN][1000 genomes]
rs4535356	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4571359	0.95[ASN][1000 genomes]
rs4571360	0.95[ASN][1000 genomes]
rs4639097	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4975079	0.95[ASN][1000 genomes]
rs4975080	0.91[ASN][1000 genomes]
rs4975166	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4975171	0.95[ASN][1000 genomes]
rs4975172	0.95[ASN][1000 genomes]
rs4975173	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4988619	0.95[ASN][1000 genomes]
rs56008448	0.84[ASN][1000 genomes]
rs56205707	0.89[ASN][1000 genomes]
rs58479998	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6534217	0.95[ASN][1000 genomes]
rs6534218	0.95[ASN][1000 genomes]
rs6534222	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6534253	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6810580	0.95[ASN][1000 genomes]
rs6826553	0.84[ASN][1000 genomes]
rs6826564	0.95[ASN][1000 genomes]
rs6827253	1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs6832917	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837864	0.95[ASN][1000 genomes]
rs6853034	0.95[ASN][1000 genomes]
rs6855921	0.95[ASN][1000 genomes]
rs72870807	0.89[ASN][1000 genomes]
rs72870815	0.89[ASN][1000 genomes]
rs72870819	0.89[ASN][1000 genomes]
rs7656444	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs7659766	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs7673022	0.95[ASN][1000 genomes]
rs7676343	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7679438	0.95[ASN][1000 genomes]
rs7694880	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695330	0.95[ASN][1000 genomes]
rs9307489	0.95[ASN][1000 genomes]
rs9715410	0.95[ASN][1000 genomes]
rs9993157	0.81[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80130600-80138000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:80131400-80147600	Weak transcription	Placenta	Placenta
3	chr4:80133000-80136400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:80133000-80138000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:80133600-80138000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:80135000-80135600	Flanking Active TSS	K562	blood

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