Variant report

Variant	rs7668584
Chromosome Location	chr4:143849647-143849648
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs55675363	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55920161	1.00[AMR][1000 genomes]
rs55947218	1.00[AMR][1000 genomes]
rs56330901	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57206134	1.00[AMR][1000 genomes]
rs57770652	1.00[AMR][1000 genomes]
rs58070744	1.00[AMR][1000 genomes]
rs58269423	1.00[AMR][1000 genomes]
rs58306079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58701532	1.00[AMR][1000 genomes]
rs60285299	1.00[AMR][1000 genomes]
rs60387330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61538113	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61741556	1.00[AMR][1000 genomes]
rs73850569	1.00[AMR][1000 genomes]
rs73850572	1.00[AMR][1000 genomes]
rs73850573	1.00[AMR][1000 genomes]
rs73850574	1.00[AMR][1000 genomes]
rs73850575	1.00[AMR][1000 genomes]
rs73850577	1.00[AMR][1000 genomes]
rs73850580	1.00[AMR][1000 genomes]
rs73850581	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850620	1.00[AMR][1000 genomes]
rs73850621	1.00[AMR][1000 genomes]
rs73850622	1.00[AMR][1000 genomes]
rs73850641	1.00[AMR][1000 genomes]
rs73850662	1.00[AMR][1000 genomes]
rs73853610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7654096	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7690525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880175	chr4:143779613-143892252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv10580	chr4:143794158-143856359	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830102	chr4:143820268-143953611	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143845600-143850400	Weak transcription	Fetal Intestine Large	intestine
2	chr4:143845600-143850400	Weak transcription	Fetal Intestine Small	intestine
3	chr4:143846800-143850600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:143848000-143849800	Enhancers	Colon Smooth Muscle	Colon
5	chr4:143848200-143849800	Enhancers	Fetal Stomach	stomach
6	chr4:143848200-143849800	Enhancers	Rectal Smooth Muscle	rectum
7	chr4:143848200-143849800	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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