Variant report

Variant	rs7675490
Chromosome Location	chr4:56708017-56708018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:56695605..56697641-chr4:56707678..56709295,2	MCF-7	breast:
2	chr4:56469594..56472542-chr4:56706462..56708819,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1072799	0.87[EUR][1000 genomes]
rs11727702	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11729456	0.93[EUR][1000 genomes]
rs11734942	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17086132	0.84[EUR][1000 genomes]
rs17086150	0.84[EUR][1000 genomes]
rs17728804	0.86[EUR][1000 genomes]
rs34179097	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56026480	0.90[EUR][1000 genomes]
rs6814812	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6817717	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6845953	0.90[EUR][1000 genomes]
rs6848009	0.87[EUR][1000 genomes]
rs73238359	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73238365	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73238367	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73238368	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73238369	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73238370	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73238371	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73238372	0.87[EUR][1000 genomes]
rs73238373	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73238377	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73238379	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73238380	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73238381	0.87[EUR][1000 genomes]
rs73238382	0.87[EUR][1000 genomes]
rs73238383	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73238384	0.90[EUR][1000 genomes]
rs73238387	0.90[EUR][1000 genomes]
rs73238390	0.90[EUR][1000 genomes]
rs73238395	0.87[EUR][1000 genomes]
rs73238397	0.90[EUR][1000 genomes]
rs73238398	0.90[EUR][1000 genomes]
rs73238399	0.90[EUR][1000 genomes]
rs73238400	0.90[EUR][1000 genomes]
rs748013	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7657912	0.90[EUR][1000 genomes]
rs7669903	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7675287	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7690739	0.84[EUR][1000 genomes]
rs7698100	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv3406311	chr4:56580578-56840877	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv427681	chr4:56651921-56908209	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56707600-56708200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:56707600-56708400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr4:56707600-56708800	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr4:56707600-56708800	Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr4:56707800-56708200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr4:56707800-56708400	Active TSS	H9 Cell Line	embryonic stem cell
7	chr4:56707800-56708400	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr4:56707800-56708400	Active TSS	K562	blood
9	chr4:56707800-56709000	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr4:56708000-56708200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
11	chr4:56708000-56708200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr4:56708000-56708200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:56708000-56708200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr4:56708000-56708200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:56708000-56708400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:56708000-56708400	Active TSS	Placenta	Placenta
17	chr4:56708000-56709000	Active TSS	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links