Variant report

Variant	rs7675690
Chromosome Location	chr4:75248651-75248652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10518126	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1460015	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57346142	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57839099	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57933408	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59107719	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59690065	0.85[EUR][1000 genomes]
rs60611827	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60972393	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61476105	0.85[EUR][1000 genomes]
rs61549491	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61597562	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61684000	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6831666	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6836436	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6837909	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72859325	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72859327	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72859333	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72859334	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72859338	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72859361	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72859363	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72859366	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7668475	0.85[EUR][1000 genomes]
rs7669104	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7669542	0.85[EUR][1000 genomes]
rs7669666	0.85[EUR][1000 genomes]
rs7674887	0.85[EUR][1000 genomes]
rs7690224	0.85[EUR][1000 genomes]
rs7690629	0.85[EUR][1000 genomes]
rs7691008	0.85[EUR][1000 genomes]
rs7696072	0.85[EUR][1000 genomes]
rs7697009	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1009099	chr4:75089233-75726206	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75240600-75255200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:75241400-75260200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:75242600-75252600	Weak transcription	Fetal Intestine Small	intestine
4	chr4:75244200-75255600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:75244600-75252400	Strong transcription	NHEK	skin
6	chr4:75244600-75253600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:75244800-75253600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:75245000-75253200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:75245800-75251800	Strong transcription	HMEC	breast
10	chr4:75247000-75251800	Weak transcription	K562	blood
11	chr4:75247000-75255400	Strong transcription	A549	lung
12	chr4:75248600-75250400	Weak transcription	Fetal Intestine Large	intestine

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