Variant report

Variant	rs7675844
Chromosome Location	chr4:143366422-143366423
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10002270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28576569	1.00[AMR][1000 genomes]
rs58333696	1.00[AMR][1000 genomes]
rs9992455	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv830100	chr4:143216951-143393305	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143338600-143366600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143351200-143371200	Weak transcription	Pancreas	Pancrea
3	chr4:143355800-143367600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:143357400-143371200	Weak transcription	Aorta	Aorta
5	chr4:143357600-143367800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:143366000-143367800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:143366200-143366600	Enhancers	Primary hematopoietic stem cells	blood
8	chr4:143366200-143367000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:143366200-143367800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:143366200-143369200	Enhancers	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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