Variant report

Variant	rs7679393
Chromosome Location	chr4:87630136-87630137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6828022	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1012836	chr4:87279206-87643558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2757071	chr4:87417291-87689533	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759264	chr4:87417291-87689533	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv879522	chr4:87473776-87644842	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv830001	chr4:87585278-87748643	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87574600-87644400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:87579200-87642600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:87579400-87644400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:87586400-87643200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:87591800-87639000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:87591800-87641000	Weak transcription	Brain Anterior Caudate	brain
7	chr4:87592400-87656400	Weak transcription	Adipose Nuclei	Adipose
8	chr4:87593800-87641400	Weak transcription	Brain Angular Gyrus	brain
9	chr4:87594400-87642600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:87594400-87659800	Weak transcription	Ovary	ovary
11	chr4:87594800-87639200	Weak transcription	Fetal Kidney	kidney
12	chr4:87595200-87638200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:87595200-87651200	Weak transcription	Fetal Stomach	stomach
14	chr4:87600400-87639200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr4:87604800-87638200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:87606800-87641000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr4:87610400-87639600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr4:87611400-87638200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr4:87623400-87635400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:87623400-87641200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr4:87623400-87641200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:87623400-87643000	Weak transcription	Fetal Lung	lung
23	chr4:87623600-87636400	Weak transcription	NHDF-Ad	bronchial
24	chr4:87623600-87637000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:87623600-87639400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr4:87624800-87638600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr4:87625200-87635600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:87625200-87651600	Weak transcription	Esophagus	oesophagus
29	chr4:87625400-87638200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr4:87625400-87643400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:87628200-87631600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr4:87628400-87637200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:87628600-87630200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr4:87628600-87630600	Weak transcription	NHEK	skin
35	chr4:87628600-87634600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr4:87628600-87636600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr4:87628600-87638000	Weak transcription	HMEC	breast
38	chr4:87628800-87641600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr4:87628800-87641800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:87629200-87630400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr4:87629800-87630400	Genic enhancers	Brain Hippocampus Middle	brain
42	chr4:87629800-87630800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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