Variant report

Variant	rs7680254
Chromosome Location	chr4:174320595-174320596
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174253388..174255734-chr4:174320539..174323708,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SAP30-10	chr4:174320435-174321479	NONHSAT099248

Variant related genes	Relation type
ENSG00000164104	Chromatin interaction

rs_ID	r²[population]
rs13120486	0.98[AFR][1000 genomes]
rs13137653	1.00[GIH][hapmap]
rs4696067	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs4696068	0.98[AFR][1000 genomes]
rs6553693	0.82[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes]

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174293400-174321800	Weak transcription	Pancreas	Pancrea
2	chr4:174293400-174333200	Weak transcription	Gastric	stomach
3	chr4:174294000-174323800	Weak transcription	HSMMtube	muscle
4	chr4:174294000-174340400	Weak transcription	Fetal Intestine Large	intestine
5	chr4:174294200-174334400	Weak transcription	Right Ventricle	heart
6	chr4:174294200-174341600	Weak transcription	Fetal Intestine Small	intestine
7	chr4:174294400-174322000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:174294400-174324600	Weak transcription	Thymus	Thymus
9	chr4:174294600-174338000	Weak transcription	Fetal Brain Male	brain
10	chr4:174294800-174334200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:174294800-174336200	Weak transcription	Adipose Nuclei	Adipose
12	chr4:174294800-174341800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:174295400-174331400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:174295400-174332200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:174295400-174335800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:174297200-174333400	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:174297200-174338000	Weak transcription	Esophagus	oesophagus
18	chr4:174297400-174338000	Weak transcription	Fetal Lung	lung
19	chr4:174300200-174339000	Weak transcription	Ovary	ovary
20	chr4:174300400-174333000	Weak transcription	Fetal Stomach	stomach
21	chr4:174303000-174333200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:174306200-174326400	Weak transcription	Dnd41	blood
23	chr4:174313200-174325800	Weak transcription	Left Ventricle	heart
24	chr4:174314800-174321800	Weak transcription	Stomach Mucosa	stomach
25	chr4:174315800-174328400	Weak transcription	Primary T cells from cord blood	blood
26	chr4:174317200-174325000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr4:174318000-174323800	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr4:174318000-174331400	Weak transcription	Lung	lung
29	chr4:174318600-174320600	Active TSS	Brain Anterior Caudate	brain
30	chr4:174318600-174320600	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr4:174318600-174320600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr4:174318600-174320800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr4:174318600-174320800	Active TSS	Aorta	Aorta
34	chr4:174318800-174320600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:174318800-174320600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr4:174318800-174320600	Active TSS	Duodenum Smooth Muscle	Duodenum
37	chr4:174318800-174320600	Active TSS	Stomach Smooth Muscle	stomach
38	chr4:174318800-174323800	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr4:174319000-174320600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:174319000-174320600	Active TSS	Brain Cingulate Gyrus	brain
41	chr4:174319000-174320600	Active TSS	Brain Substantia Nigra	brain
42	chr4:174319200-174320600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr4:174319200-174320600	Active TSS	Brain Angular Gyrus	brain
44	chr4:174319600-174335400	Weak transcription	Fetal Brain Female	brain
45	chr4:174319600-174341800	Weak transcription	NHDF-Ad	bronchial
46	chr4:174319800-174320600	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr4:174319800-174320800	Flanking Active TSS	Rectal Smooth Muscle	rectum
48	chr4:174319800-174324000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:174320000-174320600	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr4:174320000-174320600	Enhancers	HUES64 Cell Line	embryonic stem cell

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