Variant report

Variant	rs7680941
Chromosome Location	chr4:56514087-56514088
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:56512381..56514282-chr4:56518613..56520259,2	K562	blood:
2	chr4:56512523..56514282-chr4:56518613..56521303,2	K562	blood:
3	chr4:56500691..56503425-chr4:56513263..56514979,2	K562	blood:

Variant related genes	Relation type
ENSG00000109255	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10002268	1.00[ASN][1000 genomes]
rs10002541	0.94[CHB][hapmap]
rs10003113	1.00[ASN][1000 genomes]
rs10003211	1.00[ASN][1000 genomes]
rs10011137	0.90[ASN][1000 genomes]
rs10016506	0.83[CHB][hapmap]
rs10026692	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs10033028	1.00[ASN][1000 genomes]
rs10517356	1.00[ASN][1000 genomes]
rs1077103	0.98[ASN][1000 genomes]
rs1077104	0.98[ASN][1000 genomes]
rs11133383	0.88[CHB][hapmap]
rs11133399	0.94[CHB][hapmap]
rs11133404	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11726609	0.94[CHB][hapmap]
rs11735267	0.94[CHB][hapmap]
rs11735910	1.00[ASN][1000 genomes]
rs11931026	1.00[ASN][1000 genomes]
rs11931061	0.94[CHB][hapmap]
rs11935806	0.94[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs11939815	0.94[CHB][hapmap]
rs11945558	1.00[ASN][1000 genomes]
rs12498734	0.88[ASN][1000 genomes]
rs12499623	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12510588	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12512220	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13102385	0.94[CHB][hapmap]
rs13118189	0.85[ASN][1000 genomes]
rs1488939	0.98[ASN][1000 genomes]
rs1522111	1.00[CHB][hapmap]
rs1809643	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1844219	1.00[ASN][1000 genomes]
rs1844220	1.00[ASN][1000 genomes]
rs1873092	0.94[CHB][hapmap]
rs1906677	0.95[ASN][1000 genomes]
rs1971991	1.00[ASN][1000 genomes]
rs2177127	0.94[CHB][hapmap]
rs2177129	0.94[CHB][hapmap]
rs2412646	0.89[CHB][hapmap]
rs2412663	0.94[CHB][hapmap]
rs28377791	0.85[ASN][1000 genomes]
rs28448373	1.00[ASN][1000 genomes]
rs28626806	1.00[ASN][1000 genomes]
rs28644417	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28694060	0.88[ASN][1000 genomes]
rs2899037	0.94[CHB][hapmap]
rs3805154	0.94[CHB][hapmap]
rs3817444	0.88[CHB][hapmap]
rs4580704	0.94[CHB][hapmap]
rs4865010	0.94[CHB][hapmap]
rs4865018	0.94[CHB][hapmap]
rs4865020	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4865021	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61072181	0.86[ASN][1000 genomes]
rs6554286	0.94[CHB][hapmap]
rs6811520	0.88[CHB][hapmap]
rs6812042	0.94[CHB][hapmap]
rs6815516	0.94[CHB][hapmap]
rs6824955	0.88[CHB][hapmap]
rs6827359	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6829182	0.94[CHB][hapmap]
rs6837710	0.94[CHB][hapmap]
rs6839462	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6850524	0.94[CHB][hapmap]
rs6851838	1.00[CHB][hapmap]
rs726967	0.94[CHB][hapmap]
rs7658532	1.00[ASN][1000 genomes]
rs7667849	0.94[CHB][hapmap]
rs7673908	0.94[CHB][hapmap]
rs7684810	0.87[CHB][hapmap]
rs7690375	1.00[ASN][1000 genomes]
rs7690566	0.98[ASN][1000 genomes]
rs7697972	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9312662	0.94[CHB][hapmap]
rs9312664	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9997288	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv998179	chr4:56425126-56694339	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv932636	chr4:56438618-56667329	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879021	chr4:56482750-56648713	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3395811	chr4:56486113-56514675	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1006944	chr4:56512574-56580169	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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